Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0156 ATGATGGATCATGTTATTGGTGGGAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATATACAAACTGGAGAGGAAGTGGCTGTCAAGCTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCATCTCAAGTGGTTTGGAGTAGAGGGAGACTACAATGTCATGGCAATCGATCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGTCAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCTAGAGGTTTCCTTCACCGTGACATTAAGCCAGACAATTTTTTAATGGGCCTAGGACGTAAAGCAAACCAGGTGTACGCCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCACAGGCACATACCATACAGGGAAAACAAGAACCTTACTGGCACAGCTCGGTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAGTCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAGAATCAGTGAGAAGAAAATGTCAACTCCGATAGAGGTGCTCTGTAAATCATATCCCTCAGAGTTTGTATCATATTTTCACTACTGCCGATCGTTGCGGTTTGAGGACAAGCCTGATTATTCATATTTAAAAAGGCTTTTTCGGGATTTATTTATTCGCGAAGGCTATCAATTTGACTATGTTTTTGATTGGACGATATTGAAGTATCCACAGATTGGTGGCAGTAGCTCTAGAGGACGGCATGACAGTGGCAAGGCAGCTATGCCTGCAGGACCATCTATACAAAAGCCAGAAAAAACATCAGTTGGGAAAGAGATCCGAGAAAAATTCTCTGGTGCTGTTGAAGCTTTCTCGCGGAGGAATCCAACAGGTTCTAGTCCTCATGTTGATCACTCCAAGCATAGGAGTTTTGAGGAAGTAGCAGTACACAAGGATGTGTATCATGATCAAGAGAAGGGACGCAATTCGTCTCGATATGGCAGCAGTTCAAGAAGACCCATAATCTCATCATCAACCAGGCCAAGTTCCTCTGGCGATCATACTGACAGTCGTACTGGCCGGCTAACCTCAAGTGTAAGCCGACCATCTACCATGCAGAGAAATATTCAACCTATGTATGAGACCAAACAACCAACTTACACACGCTCGGGATCTTCTAGAGGCAACCGCGACGACCCTCTGCGGAGTTTTGAGCTCCTCTCTATCAGGAAGTAA 1395 0.4337 MMDHVIGGKFKLGRKIGSGSFGELYIAVNIQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSSRGRHDSGKAAMPAGPSIQKPEKTSVGKEIREKFSGAVEAFSRRNPTGSSPHVDHSKHRSFEEVAVHKDVYHDQEKGRNSSRYGSSSRRPIISSSTRPSSSGDHTDSRTGRLTSSVSRPSTMQRNIQPMYETKQPTYTRSGSSRGNRDDPLRSFELLSIRK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0156 464 MobiDBLite consensus disorder prediction 327 341 - -
Aed4g0156 464 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Aed4g0156 464 MobiDBLite consensus disorder prediction 302 464 - -
Aed4g0156 464 CDD STKc_CK1_delta_epsilon 9 283 - -
Aed4g0156 464 SMART serkin_6 10 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0156 464 MobiDBLite consensus disorder prediction 353 382 - -
Aed4g0156 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Aed4g0156 464 PANTHER CASEIN KINASE-RELATED 2 452 - -
Aed4g0156 464 Gene3D Transferase(Phosphotransferase) domain 1 1 337 - -
Aed4g0156 464 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0156 464 MobiDBLite consensus disorder prediction 383 447 - -
Aed4g0156 464 PANTHER CASEIN KINASE I-LIKE PROTEIN 2 452 - -
Aed4g0156 464 MobiDBLite consensus disorder prediction 448 464 - -
Aed4g0156 464 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Aed4g0156 464 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0156 Aed-Chr4 1123025 1129594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0156 9 224 EF-hand Containing Proteins AT2G17890 24.336 1.54e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Aed4g0156 Pkinase 6.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0156 K08960 - gmx:100781494 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0156 4 1123025 1129594 Aed4g0156 4 1123025 1129594 ECH
Aed4g0156 4 1123025 1129594 Aed8g0946 8 8241677 8249745 PCT