Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0144 ATGGATGGTTCTGCAAGTAAAACTAAACTGTTGAATCCATGGATGCTCCACTTCCAGAAACTTGCTCTCGAACTCAAGTGCCCTCTCTGTTCCTGTTTGGCTGATTGCATAACCGCTGGGTCTGAATGCGCTGTTTGCAATGCAAAGTATGCTCAATCAGATGTAAGGCACGTGCCTTTTGTGGAAAATGTGGTAGCAATATATAAAAGCTTGGATGCTACTTTTTGTGCTAGTCTGTTCCAGCGACCTTCTTCAGGTGATGGGGGGGTTTTGGAGCCGTGCCAAGTGTTTCCTAATTCAACTTCTAGTAGTATAAAAGCTGGCAAGCTTCCTCGAAATTTACCAAATTCGAATGAGGTTGGGATTGTCAAGAATCACAAAACCAAGATTGCAGTGCTTGATAAAGCTGAGGAGCTTGAGTTGTCTTGTGGGAGAGGGAAGCCCAATCCAATGCAATCTTCTTCCCGGATGGAACTTGGGGGCCGTGAAGATTGTGGAGTTGTGGAAATGGATGTGAATCAAATCATGCAATCAGCACCGGATAGTCCTCCTTTTTGTGATACCAAAGGTTCAGATAATGACTGCAGTGATCAAGACAGTGAGCATCCATTACTTCCTGGTAGATTGGAAAGTTCTTCACTAAAGAGAGCAAGTGCAGGAAACGGAAATTTGAAAGAAAGAATGGGACAGCTCAGGTCTGAAAGTTCAGCCTCTGAAACTGAGGGTCTTGCAAGGGATCTCAAGAGACAGAAAAATCATGAGTGTCCAACTGGAAGGATCTGTTCATTTTGCCAATCCTCTAAAACCTCAGAGGCTACTGGACCAATGCTGCATTATTCAAATGGGAACTTAGTTACAGGAGATGTGGCAATGCAACAAAATGTCATACCTGTGCATAGAAGTTGCATTGACTGGGCACCACAAGTGTACTTTGTTGGTGAAGTGGTTAAGAATTTGAAGGCGGAGGTGGCAAGGGGAGCGAAACTTAAATGCACTAAATGTAATCTAAAGGGAGCTGCTCTTGGCTGCTATGTCAAATCCTGTAGAAGAACTTATCATGTTCCTTGTGCAATGGACATCTCAAATTGCCGTTGGGATCATGAGGATTTTCTCTTGCTCTGCCCTGTCCATTCAAATGTCAAATTTCCATGTGAGAAAATCAGGCCTAAGAAACAGGCAACTCAGAAGCATCCCACTTTGTCTCATCCGCCATCTCATCACTCAAATCCTCTTGAAGTTTCACAGGATGATAGTAAGCAAATGGTTTTTTGTGGATCTGCTCTATCAAATGAAGAAAAGGTACTTTTGGTCAATTATGCAAGCAAGGTTGGTGCTACAGTGACCAAGTTCTGGACCTCAAATGTTACCCATGTAATTGCAGCAACTGATGCACATGGAGCATGCTCCAGGACATTGAAAGTTCTCATGGCAATTCTAAATGGACGTTGGGTTCTAAAAATGGATTGGATTAAAGCATGCATGGAAGAGATAAATCCAGTAGAGGAAGAACCATATGAAATTATTGTTGACAACCAAGGGTGTGAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCTTTGACCAATGAGCCAAAGCTATTCAGTGGGTTAAAGTTTTATTTTTCTGGGGATTACGTATCAACTTACAGGGAAGATCTTGAAGAATTAATTGAAGTGGGGGGAGGTACTGTTTTGAAAAGCAAGGAAGAGTTGGTAGCACAAAGACATGGATGGAAAGGGGATTCTTCAAAGTTGCTGGTTGTTTACAACCTTGATCCCCCACAAGGATGCAAGTTGGGTGAGGAAGTTTCAATTTTATGGCAAAGGCTAAACGAAGCAGAGGATTTAGCTGCTAGCACTTTACAAGTTATTGGTCATACGTGGATTCTTGAATCAATTGCTGCATGTAATTTGCAGCCTTTTGTTAACTAA 1929 0.4266 MDGSASKTKLLNPWMLHFQKLALELKCPLCSCLADCITAGSECAVCNAKYAQSDVRHVPFVENVVAIYKSLDATFCASLFQRPSSGDGGVLEPCQVFPNSTSSSIKAGKLPRNLPNSNEVGIVKNHKTKIAVLDKAEELELSCGRGKPNPMQSSSRMELGGREDCGVVEMDVNQIMQSAPDSPPFCDTKGSDNDCSDQDSEHPLLPGRLESSSLKRASAGNGNLKERMGQLRSESSASETEGLARDLKRQKNHECPTGRICSFCQSSKTSEATGPMLHYSNGNLVTGDVAMQQNVIPVHRSCIDWAPQVYFVGEVVKNLKAEVARGAKLKCTKCNLKGAALGCYVKSCRRTYHVPCAMDISNCRWDHEDFLLLCPVHSNVKFPCEKIRPKKQATQKHPTLSHPPSHHSNPLEVSQDDSKQMVFCGSALSNEEKVLLVNYASKVGATVTKFWTSNVTHVIAATDAHGACSRTLKVLMAILNGRWVLKMDWIKACMEEINPVEEEPYEIIVDNQGCEGGPKAGRLRALTNEPKLFSGLKFYFSGDYVSTYREDLEELIEVGGGTVLKSKEELVAQRHGWKGDSSKLLVVYNLDPPQGCKLGEEVSILWQRLNEAEDLAASTLQVIGHTWILESIAACNLQPFVN 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0144 642 MobiDBLite consensus disorder prediction 394 415 - -
Aed4g0144 642 SUPERFAMILY BRCT domain 532 639 IPR036420 -
Aed4g0144 642 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 9 640 IPR031099 GO:0006281|GO:0006974
Aed4g0144 642 SUPERFAMILY BRCT domain 421 507 IPR036420 -
Aed4g0144 642 ProSiteProfiles BRCT domain profile. 418 507 IPR001357 -
Aed4g0144 642 CDD BRCT_Bard1_rpt1 422 496 - -
Aed4g0144 642 ProSiteProfiles Extended PHD (ePHD) domain profile. 258 378 IPR034732 -
Aed4g0144 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 380 IPR013083 -
Aed4g0144 642 Pfam PHD-like zinc-binding domain 299 378 - -
Aed4g0144 642 Gene3D BRCT domain 417 523 IPR036420 -
Aed4g0144 642 MobiDBLite consensus disorder prediction 177 249 - -
Aed4g0144 642 Pfam BRCA1 C Terminus (BRCT) domain 422 494 IPR001357 -
Aed4g0144 642 Gene3D BRCT domain 530 635 IPR036420 -
Aed4g0144 642 MobiDBLite consensus disorder prediction 393 415 - -
Aed4g0144 642 Pfam BRCT domain, a BRCA1 C-terminus domain 530 639 IPR001357 -
Aed4g0144 642 SMART BRCT_7 408 497 IPR001357 -
Aed4g0144 642 SMART BRCT_7 530 635 IPR001357 -
Aed4g0144 642 ProSiteProfiles BRCT domain profile. 528 642 IPR001357 -
Aed4g0144 642 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 9 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0144 Aed-Chr4 1038833 1043976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0144 451 564 Core DNA Replication Machinery Family AT4G02110 30.833 1.08e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0144 K10683 - gmx:100784883 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0144 4 1038833 1043976 Aed4g0144 4 1038833 1043976 ECH