Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0137 ATGCATGGCAATTTGGTTTTGCCTTTTAAGGAAAACAAAGGAACATTTATTCCTAATCATACGTACGTACTACTACCACACCACTCCACAAATCCAACAACCGATAGTGATCTTCACGCGCCACGTTGGCGCGTAGGTTGCAAGCGGCTATTCCTGCAAAAGGGGCCAAAACCAAAGCGCATTCGTTCGTCACCGTTCACTCGCGAACAAGCACCCCAACCTTGGCCTTGCCGATTGATGACAACTTGTCTGGTTTGGGCATCAAGAACAAAAAACAACCTTTGTAGAATTTTGCTGGTGAGCATTACCATCCAAGGGAAAATGAAAATTATGGAAGCGCGCCCTGCTTTATCTATTGAAAGATCAAATGCTAAGCAACTCAATAACATGGGGATGTCTGAAGCATTTCCTTCATCGTTGTCTGTCCTTCCATCGCCTCTAGAAGAGACATACCCCAAATTATCTGATTCTCAGCCAGCTAATATGGAAAAAGAGCTTAAAACAAAACCTTTTACACATTCAAGTCATTTAACTTCCAGTGGAGCAGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGATCTTCATCACTCATCCTTTTCATCTCATGAGAAACACCCTAGAAATACTCATTTTATTTCACAGTCATTGAGTAACATGGCTTCATTACCATTATCTTATTCTTCAAATAGTGAAGCAATACCTTCTACAACATCAACCCCTTATTCCAATGGAAACAGTGTTTCCTGGCATACAGATTCGCTTCCTAGCTTTCTCGAATTCCCTGCCAATACCTCCATTGATAATAGTCAAGTAGAAAGCAGTGCCTGCAATATTATGTCAACTGAAGAGTATTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGTTAATCAGTGATGATGATCCTTTGACTTCTAATTGGAATGATCTTCTTGCTGACAACATTCAGGATCTTGAACCAAAGGTGGTGTACCAGGTCTCAAAATCATCTTCACAACTCTCAATAGGACACCAATCCCAAAGCCATCAACAACTTCCCACTTCATCTGGAGAAAATCGTGTTGTTGTTGCCCCATCTTCCTCCGCAAATTCTGCACCTGCCAAGCCACGGATGCGCTGGACACCTGAGCTTCATGAGGCATTTGTGGAGGCTGTCAGCCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATACCATGTTAAAAGCCACTTACAGAAGTACAGGACAGCTAGATATAGACCTGAGTCATCTGAAGGAGCTGCAGAGAAAAAATCAAGTCCAATTGAAGAGATGTCATCCCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGAGGCTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAGTGCAAATCTGGCATTGATACATTTAAGGCATCATCGTCTGCCATTGAGAGTTCAGCTGGAGTGTCTTCTGATGCCATGAAAGATTCTCCAGCCAAAGCAGAATTAGAAACCATCAAAGTGGACCATTGCAAGTTAGGAGCTGATCAGGCTAATGGCAGTACCACAGTTGTGGAAAGCTCATTGGAAGTGAGTGAGAAGCAGGATGCTCCTGAAAGTCAAGCTTCTGAAAATCCTGAGCGACATGCCAGTGAAGATGGTGCTAAAGCCTCAAAGCGTCCAAGGACAGAGGAGTAA 1797 0.4307 MHGNLVLPFKENKGTFIPNHTYVLLPHHSTNPTTDSDLHAPRWRVGCKRLFLQKGPKPKRIRSSPFTREQAPQPWPCRLMTTCLVWASRTKNNLCRILLVSITIQGKMKIMEARPALSIERSNAKQLNNMGMSEAFPSSLSVLPSPLEETYPKLSDSQPANMEKELKTKPFTHSSHLTSSGAVGHMFSSSPGYSTDLHHSSFSSHEKHPRNTHFISQSLSNMASLPLSYSSNSEAIPSTTSTPYSNGNSVSWHTDSLPSFLEFPANTSIDNSQVESSACNIMSTEEYSKRNDWQEWADQLISDDDPLTSNWNDLLADNIQDLEPKVVYQVSKSSSQLSIGHQSQSHQQLPTSSGENRVVVAPSSSANSAPAKPRMRWTPELHEAFVEAVSQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKSSPIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIDTFKASSSAIESSAGVSSDAMKDSPAKAELETIKVDHCKLGADQANGSTTVVESSLEVSEKQDAPESQASENPERHASEDGAKASKRPRTEE 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0137 598 MobiDBLite consensus disorder prediction 426 447 - -
Aed4g0137 598 Pfam MYB-CC type transfactor, LHEQLE motif 457 504 IPR025756 -
Aed4g0137 598 Gene3D - 371 430 - -
Aed4g0137 598 MobiDBLite consensus disorder prediction 547 598 - -
Aed4g0137 598 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 159 598 IPR044848 GO:0003700
Aed4g0137 598 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 159 598 - -
Aed4g0137 598 Pfam Myb-like DNA-binding domain 374 425 IPR001005 -
Aed4g0137 598 MobiDBLite consensus disorder prediction 549 572 - -
Aed4g0137 598 SUPERFAMILY Homeodomain-like 370 426 IPR009057 -
Aed4g0137 598 Coils Coil 460 480 - -
Aed4g0137 598 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 369 429 IPR017930 -
Aed4g0137 598 MobiDBLite consensus disorder prediction 426 449 - -
Aed4g0137 598 MobiDBLite consensus disorder prediction 573 598 - -
Aed4g0137 598 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 372 426 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0137 Aed-Chr4 998890 1006347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0137 111 542 G2-like Transcription Factor Family AT4G28610 47.964 7.81e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed4g0137 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0137 - - gmx:100810560 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0137 4 998890 1006347 Aed4g0137 4 998890 1006347 ECH
Aed8g0961 8 8380721 8387421 Aed4g0137 4 998890 1006347 ECH
Aed4g0137 4 998890 1006347 Aed8g0961 8 8380721 8387421 PCT