Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0108 ATGGCGACAACTCAAGGTCAAGTTATTACATGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTAACCATCGAAGACGTTCAGGTCGCTCCGCCTCAGGCCGGCGAGGTCCGAGTCCAAATCCTCTTCACGGCTCTCTGCCACACCGATGCTTACACTTGGGGCGGCAAGGATCCCGAAGGTCTCTTCCCATGTATTCTCGGTCACGAAGCTGCAGGGATTGTGGAGAGTGTTGGTGAAGGTGTTACCAATGTCCAGCCTGGGGATCATGTTATTCCTTGTTACCAGGCCGAGTGTGGGGAGTGCAAGACTTGCAAATCAGGGAAGACCAATCTCTGCGGCAAGGTTCGCTCCGCCACCGGAGTTGGGGTCATGCTCAATGACGGCAAGAGTCGCTTCTCGCTCAATGGAAAGCCCATTTATCATTTCATGGGAACCTCCACTTTCAGTCAATACACTGTTGTTCATGATGTCAGTGTAGCTAAGATTGACCCCGAAGCTCCTTTGGAGAAAGTTTGTCTTCTTGGATGCGGTGTTTCCACTGGCCTTGGAGCTGTCTGGAACACTGCAAAAGTGGAGTCTGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGGCTTGCTGTTGCAGAGGGTGCAAAAACTGCTGGTGCTTCCCGGGTTATTGGCATAGATATTGACAGCAAAAAGTTTGATATAGCGAAAAACTTTGGAGTCACTGAGTTTATAAATCCAACTGAACACGATAAACCAATTCAGCAGGTCATAATTGATTGCACAGATGGTGGAGTTGATTATAGCTTTGAGTGCATTGGAAATGTCTCTGTGATGAGAGCTGCTTTGGAGTGCTGCCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCAGCATCAGGGCAGGAAATATCAACCCGTCCCTTCCAGTTGGTGAGTGGACGTGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCAGGTCACAGGTTCCTTGGCTTGTAGACAAGTACTTGAAGAAGGAAATCAAGGTTGATGAATACATTACCCATACTTTGACTCTTTCTGAGATCAACAAGGCTTTTGATCTTCTGCATGAAGGGGGATGTCTCCGTTGCGTGCTTTCAACACAAGAATGA 1143 0.4873 MATTQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVQILFTALCHTDAYTWGGKDPEGLFPCILGHEAAGIVESVGEGVTNVQPGDHVIPCYQAECGECKTCKSGKTNLCGKVRSATGVGVMLNDGKSRFSLNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPEAPLEKVCLLGCGVSTGLGAVWNTAKVESGSIVAIFGLGTVGLAVAEGAKTAGASRVIGIDIDSKKFDIAKNFGVTEFINPTEHDKPIQQVIIDCTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVSGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHTLTLSEINKAFDLLHEGGCLRCVLSTQE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0108 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
Aed4g0108 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Aed4g0108 380 Gene3D - 183 321 - -
Aed4g0108 380 SUPERFAMILY GroES-like 327 376 IPR011032 -
Aed4g0108 380 SUPERFAMILY GroES-like 4 198 IPR011032 -
Aed4g0108 380 CDD alcohol_DH_class_III 9 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Aed4g0108 380 Pfam Zinc-binding dehydrogenase 207 331 IPR013149 -
Aed4g0108 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Aed4g0108 380 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 4 379 - -
Aed4g0108 380 Gene3D - 14 373 - -
Aed4g0108 380 PANTHER ALCOHOL DEHYDROGENASE 4 379 - -
Aed4g0108 380 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 11 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0108 Aed-Chr4 766690 770007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0108 1 332 Monolignol Biosynthesis Gene Families AT1G72680 25.882 5.86e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0108 K00121 - gmx:100499743 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0108 4 766690 770007 Aed4g0108 4 766690 770007 ECH
Aed4g0108 4 766690 770007 Aed8g0292 8 2440746 2443762 PCT