Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0101 ATGGGTTATCTAGCTGTGGCTGCCAATCCTGTAGTTGGGTCCCATATTTGGGTGGAGGATCCTGATGTGGCTTGGATAGATGGTGAGGTCTTGCAGGTTAAAGGAGAAGAAATTAAAGTCCTTTGCACTTCAGGGAAGACAGTTGTTGTTAAAGCTTCCAATATATACCATAAAGATACTGAAGTCCCACCAAGTGGAGTGGATGATATGACAAAGCTTGCATACTTGCATGAACCTGGAGTCCTAGATAATCTGAGATCAAGATATGATATAAACGAAATTTATACTTACACCGGGAATATATTGATTGCTGTGAACCCTTTCATAAAGCTTCCTCATTTATATGATAGCCATATGATGGCCCAATATAAAGGAGCAGCTTTTGGTGAGCTAAGTCCACATCCCTTTGCTGTTGCAGATGAAGCATATAGGCTTATGATAAATGAGGGAGTCAGCCAGGCAATATTGGTTAGTGGTGAAAGTGGAGCTGGTAAAACAGAAAGTACCAAGTTACTCATGAGGTATCTTGCTTACATGGGTGGAAGAGCTGCTGTTGCTGAAGGTAGAACTGTTGAGCAAAAGGTCCTGGAGTCTAATCCTGTTCTAGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGGTGGGAAATAATAGATGTTAAAAAGTACAAATTAGGAGATCCAAGAATGTTTCATTACCTGAATCAATCAAATTGCTTTGAGTTGGAAGGGGTTGATGAATCTAAAGAATATAGGGATACAAGGAGAGCAATGGATATTGTTGGAATAAGTACTGAGGAACAGGATGCAATATTTAAAGTTGTTGCTGCAATTTTGCATCTTGGCAACATTGAATTTGCGAAAGGGAAGGAGATAGACTCATCTGTTCCCAAAGATGAAAAATCTCAGTTCCATCTACAGACTGCTGCTGAGCTTTTCATGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGCAAACGTGTAATTGTTACTCGTGATGAAACAATTACAAAATGGCTGGATCCGGAAGCTGCTGCACTCAGCCGAGATGCCTTGGCTAAGATTGTGTACACAAGATTATTTGATTGGTTGGTTGATAACATTAATAATTCTATTGGTCAAGACCCTGAGTCAAAATGCTTAATTGGTGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACGAACAGTTTTGAGCAATTTTGTATTAATTTGACCAATGAAAAGCTTCAGCAACATTTTAATCAGAAACCAGGTGGCATTATTGCTCTTCTGGATGAAGCTTGTATGTTTCCTAGATCTACACATGAAACTCTTGCTCAAAAGCTGTATCAGACCTTCAAAAATCACAAAAGGTTTAGCAAGCCTAAATTATCACAAAGTGACTTCACAATTTGCCATTATGCAGGAGATGTCACTTATCAAACTGAATTGTTCCTCGACAAGAATAAGGATTATGTTGTTGCAGAGCATCAGGCACTTCTTTATGCTTCCAAATGCCCCTTTGTATCAGGCTTGTTTCCCCCTTCGCCTGAAGAATCTTCTAAACAATCAAAGTTCTCTTCAATTGGTTCGCGATTTAAGCAACAATTGCAATCTTTACTTGAAACTCTCAGTGCCACTGAGCCACACTACATTCGTTGTGTAAAACCCAACAATCTTCTTAAGCCAGCAATTTTTGAGAATAAAAATGTTCTGCAGCAATTACGTTGTGGGGGAGTTATGGAGGCAATTAGGATAAGTTGTGCTGGGTATCCTACTAGAAAAACCTTCGATGAATTTGTGGATCGATTTAGCCTTCTTGCACAAGAATCATTGGATGGAAGTTCTGATGAGGTCATTGCTTGCAAGAGGATTCTAAAGAATGTTGGACTTGAAGGCTATCAGATTGGTAAGACTAAGGTGTTTCTTCGAGCTGGTCAGATGGCAGAACTAGATACCCGTAGAACTGAAATCTTAGGAAGGTCGGCAGGCATTATTCAGAGAAAAGTCCGTTCCTATTTGGCCCGCCAAAGTTTCATCTTGCTTCATTTGTCTGCTGTCCGGATTCAAGCTGCATGCAGAGGACAACTTGCTCGGCAAGTATATGAGGGAATGCGGCAGGAGGCTTCTAGTTTGATGATTCAGAGGTGCTTCCGCATGCATATTGCTCGGAAGGCGTACAAAGATTTGTATACCTCTGCTGTCTCTATCCAGACTGGTATGCGGGGGATGGCTGCTCGTTCTGAGCTACACTTTAGAAGGCAGACTAAAGCAGCAATTGCCATTCAGAGCCACTGCCGGAAATACTTGGCACAACTTCATTTCTCAAAGTTGAAGAAGGCAGCAATTACAACGCAATGTGCATGGAGAGGAAAAGTTGCTCGGCGAGAATTGCGAAAGCTCAAGATGGCTGCACGAGAAACAGGAGCTCTCCAAGCTGCCAAAAATAAGCTTGAAAAGCAAGTAGAAGACCTTTCATTAAGATTGCAGCTGGAAAAACGTTTGAGGGTTGACAATGAAGAAGCAAAAGCACAAGAAAATCGAAGATTACAATCTGCTTTGCAAGAGATGCAAGTTCAGTTTAAAGAAACTAGGTTACTTCTTGAAAAGGAGAGGGAGGCTACAAAAAGAGCAGCAGAGAGAGCGCCTGTCATACAAGAGGTTCCAGTTGTTGATGATGCTTTGTTGGAGAAGCTCAGAAGTGAGAATGAGAAACTCAAGAACATGGTGAGTTCACTGGAAAAGAAAATTGATGAAACGGAAAAAAGGTATGAAGAGGCAAACAAAATTGGCGAAGAAAGGTTGAAGCAAGCTTTGGATGCAGAATCAAAAGTAATCCAGTTGAAGACTGCTATGCAAAGGCTTGAGGAGAAATTCGTAGACATGGAATCTGCAAACCATATTCTTCAGAAACAATCTCTATTAAACTCATCTGTGAAAACAATAGCTGAGCACCTGTCTTCCCCATTGGACAAGAAGTTAGAAAATGGTCACCATGCGGCAGAAGAGCAGAAAGCTGTTGATACATTTGTTACACCTGTGAAACAATTTGGTACAGAATCAGACAGTAAATTGAGAAGATCTTACATTGAACGACAACATAATCAAGACGGCAATGATCATATGGCCTATTGGCTGTCAAATGCATCTGCATTATTGTTTTTACTTGAACAAAGCCTGAAATCTGGGGGTTCAGCAAATGCTACCCCAGCTAGAAAACCGCCTAATCCAACATCCCTCTTTGGAAGAATGACTATGAGTTTTCTTTCATCCCCTTCTTCTGCCAACCTTGCTGCCCCTCCAGCAGATGTTGTACGCAAGGTAGAGGCTAAATACCCTGCTTTGCTTTTCAAGCAGCAGCTCACAGCCTATTTGGAGAAAATATATGGCATCATTCGGGATAATTTGAAGAAGGACTTAACACAGGTTCTTGCATTATGCATCCAGGCACCAAGAACGTCAAAGGGAGGGTTACGTTCTGGCCGACCCCTCGCTAAGGATTCCCCGATAGTTCACTGGCAGAGTATGATTGAATCCCTCAATACGCTCCTCTGTACACTGAAAGAAAACTTTGTGCCACCAGTTCTTATCCAAAAGATCTTCAGTCAAACATTCTCATATATTAATGTGCAACTCTTCAATAGTCTTCTTCTACGTCGTGATTGTTGCACATTCAGCAATGGGGAATATGTGAAAGCTGGACTGGCTGAATTAGAGTTGTGGTGCTGCCAAGCAAAGGAAGAGTATGCAGGGTCATCTTGGGATGAGCTTAAGCACATAAGACAGGCTGTTGGATTCTTGGTTATTCATCAGAAGTATAGGATTTCCTACGATGAGATCATCAATGATTTATGCCCTATCTTGAGTGTCCAGCAGTTGTATAGAATATGTACACTTTACTGGGATGCTAACTACAATACTCGAAGTGTATCTCCAGATGTCCTTTCAAGCATGAGAATGCTAATGACTGAGGACTCTAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCCAGGTGA 4017 0.412 MGYLAVAANPVVGSHIWVEDPDVAWIDGEVLQVKGEEIKVLCTSGKTVVVKASNIYHKDTEVPPSGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADEAYRLMINEGVSQAILVSGESGAGKTESTKLLMRYLAYMGGRAAVAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSRWEIIDVKKYKLGDPRMFHYLNQSNCFELEGVDESKEYRDTRRAMDIVGISTEEQDAIFKVVAAILHLGNIEFAKGKEIDSSVPKDEKSQFHLQTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYTRLFDWLVDNINNSIGQDPESKCLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQKPGGIIALLDEACMFPRSTHETLAQKLYQTFKNHKRFSKPKLSQSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLYASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQSLLETLSATEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFSLLAQESLDGSSDEVIACKRILKNVGLEGYQIGKTKVFLRAGQMAELDTRRTEILGRSAGIIQRKVRSYLARQSFILLHLSAVRIQAACRGQLARQVYEGMRQEASSLMIQRCFRMHIARKAYKDLYTSAVSIQTGMRGMAARSELHFRRQTKAAIAIQSHCRKYLAQLHFSKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEDLSLRLQLEKRLRVDNEEAKAQENRRLQSALQEMQVQFKETRLLLEKEREATKRAAERAPVIQEVPVVDDALLEKLRSENEKLKNMVSSLEKKIDETEKRYEEANKIGEERLKQALDAESKVIQLKTAMQRLEEKFVDMESANHILQKQSLLNSSVKTIAEHLSSPLDKKLENGHHAAEEQKAVDTFVTPVKQFGTESDSKLRRSYIERQHNQDGNDHMAYWLSNASALLFLLEQSLKSGGSANATPARKPPNPTSLFGRMTMSFLSSPSSANLAAPPADVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKDLTQVLALCIQAPRTSKGGLRSGRPLAKDSPIVHWQSMIESLNTLLCTLKENFVPPVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICTLYWDANYNTRSVSPDVLSSMRMLMTEDSNNAQSDSFLLDDSSR 1338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0101 1338 PANTHER MYOSIN 419 1031 - -
Aed4g0101 1338 PANTHER MYOSIN 223 419 - -
Aed4g0101 1338 PANTHER MYOSIN 1031 1336 - -
Aed4g0101 1338 Pfam DIL domain 1197 1300 IPR002710 -
Aed4g0101 1338 Pfam Myosin head (motor domain) 419 641 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed4g0101 1338 Pfam Myosin head (motor domain) 67 216 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed4g0101 1338 ProSiteProfiles Dilute domain profile. 1020 1321 IPR002710 -
Aed4g0101 1338 Gene3D - 400 419 - -
Aed4g0101 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 706 IPR027417 -
Aed4g0101 1338 ProSiteProfiles IQ motif profile. 775 804 IPR000048 GO:0005515
Aed4g0101 1338 ProSiteProfiles Myosin motor domain profile. 65 653 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed4g0101 1338 ProSiteProfiles IQ motif profile. 679 708 IPR000048 GO:0005515
Aed4g0101 1338 Gene3D Kinesin motor domain 545 587 IPR036961 -
Aed4g0101 1338 Gene3D Kinesin motor domain 15 217 IPR036961 -
Aed4g0101 1338 Gene3D Myosin VI head, motor domain, U50 subdomain 267 399 - -
Aed4g0101 1338 Gene3D - 588 654 - -
Aed4g0101 1338 Gene3D - 656 705 - -
Aed4g0101 1338 Gene3D - 754 803 - -
Aed4g0101 1338 Gene3D - 706 753 - -
Aed4g0101 1338 CDD MyosinXI_CBD 1024 1337 IPR037975 GO:0007015
Aed4g0101 1338 CDD MYSc_Myo11 79 641 IPR036018 -
Aed4g0101 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 708 804 IPR027417 -
Aed4g0101 1338 SMART MYSc_2a 59 654 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed4g0101 1338 Coils Coil 893 927 - -
Aed4g0101 1338 Pfam Myosin N-terminal SH3-like domain 13 55 IPR004009 GO:0003774|GO:0005524|GO:0016459
Aed4g0101 1338 PANTHER MYOSIN-6 419 1031 - -
Aed4g0101 1338 PANTHER MYOSIN-6 223 419 - -
Aed4g0101 1338 PANTHER MYOSIN-6 1031 1336 - -
Aed4g0101 1338 Coils Coil 798 871 - -
Aed4g0101 1338 PANTHER MYOSIN-6 9 216 - -
Aed4g0101 1338 ProSiteProfiles IQ motif profile. 727 756 IPR000048 GO:0005515
Aed4g0101 1338 ProSiteProfiles IQ motif profile. 752 781 IPR000048 GO:0005515
Aed4g0101 1338 PANTHER MYOSIN 9 216 - -
Aed4g0101 1338 SMART DIL_2 1196 1303 IPR002710 -
Aed4g0101 1338 Pfam IQ calmodulin-binding motif 777 796 IPR000048 GO:0005515
Aed4g0101 1338 Pfam IQ calmodulin-binding motif 707 725 IPR000048 GO:0005515
Aed4g0101 1338 Pfam IQ calmodulin-binding motif 753 772 IPR000048 GO:0005515
Aed4g0101 1338 Pfam IQ calmodulin-binding motif 682 699 IPR000048 GO:0005515
Aed4g0101 1338 Gene3D - 420 544 - -
Aed4g0101 1338 ProSiteProfiles IQ motif profile. 704 733 IPR000048 GO:0005515
Aed4g0101 1338 PRINTS Myosin heavy chain signature 384 412 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed4g0101 1338 PRINTS Myosin heavy chain signature 95 114 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed4g0101 1338 PRINTS Myosin heavy chain signature 152 177 IPR001609 GO:0003774|GO:0005524|GO:0016459
Aed4g0101 1338 Coils Coil 935 969 - -
Aed4g0101 1338 SMART iq_5 774 796 IPR000048 GO:0005515
Aed4g0101 1338 SMART iq_5 655 677 IPR000048 GO:0005515
Aed4g0101 1338 SMART iq_5 703 725 IPR000048 GO:0005515
Aed4g0101 1338 SMART iq_5 678 700 IPR000048 GO:0005515
Aed4g0101 1338 SMART iq_5 751 773 IPR000048 GO:0005515
Aed4g0101 1338 SMART iq_5 726 748 IPR000048 GO:0005515
Aed4g0101 1338 Gene3D - 218 265 - -
Aed4g0101 1338 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 11 60 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0101 Aed-Chr4 711042 723249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0101 9 1326 Myosins gene family AT5G43900 67.945 0.0 1962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0101 K10357 - gmx:100795648 2342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0101 4 711042 723249 Aed4g0101 4 711042 723249 ECH
Aed4g0101 4 711042 723249 Aed8g1857 8 23238010 23251880 PCT
Aed8g0297 8 2501125 2518363 Aed4g0101 4 711042 723249 PCT