Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0094 ATGGACGACCACCACGAATACCCGATTTTGGCGCATTCTTCTCGCCAAAAGAAACCCTCCATTGCAGACGACGACGACATCATGGAGCTGCTATGGCACAACGGCCAGGTCGTGATGCAGAGTCAGAACCAGCGTTCTCTCAGAAACTCCGACGACGCCTCTCCTTCTGCGCCGAGGGAGAATTTCAATCACCATCTCTTCATGCAGGAAGGCGAAATGGCGTCGTGGCTTCACTATCCAATAGACGACGACGATCCTCCGTTCGATCAAACCTTCGCCGCTGATTTCCTCTATTCGCCGCCGACGGTTAACAACAGAAGCGCCATGCAAACCCTCGGCCGGACGTCTCAGCTCACGGAGCTCCGCCCGATGCCGCCGAATCCTCGGCCTCCTATTCCGCCGCCGAGGCGGCCGGAACAAAGGACGCCGAACTTCGCGTACTTCTCGAGGCACAATACGAGAGCCGCGGAGCCGAACGTGAAGACCTCCGCGAGGGAGTCCACGGTGGTGGATTCGTGCGACACGCCGGCCGCAACAGCGGCTGCGGCGGCATCGAGAGTTTCGGAGACGGTGAGGAGCGTGGCGGAACCGATGGAAGGAGGAGATTGCGGCGCGGCGGCGCCTTCGATGAGTGCAGGCTTGGGAAGGAGTACGATGATGTGCGATTTGACGATGACGTCATCGCCGGGCGGTTCGAGTAGCAGCGGCGAGCCGGTTCAGGCGGCGGCGGCGGCGGAGGACCGGAAGCGGAAGGGACGGGAGGCGGAGGAATGGGAGTGTCAGAGCGAGGGCGTTGATTTTGAATCGGAAGCAAAAAAGCAAGTTCGTGGATCGACATCTACAAAGAGATCGCGTGCCGCGGAGGTCCATAATCTCTCCGAGAGGAGGCGTCGCGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGTTGCAATAAGTCGGACAAAGCTTCAATGCTGGATGAAGCAATTTCGTACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGGATGGGTATGGGTATGGGTATGGAAATGGGAATGAACAGACCTGTAATGCCGTTTCCCAATATGTTACCTGGTTCGGCTTTGCCAGCAGCAACAGCAGCTGCAGCTGCTCATTTGGGACCAAGGTTTCCAATGCCTCCTTTCCACATGCCGCATGTTCCTGCTCCTGATTCATCTAGAATGCAAGCAGCAAATCAGTCAGATAATAATATGGTCACCCCAGTTGGTCCACCTGATCCAAATCAGTCATGTATCCCAAATTTCACTGATCCTTATCAACAATATCTTGGTCCCCACCAGATGCAGTTTCAATTAATTCAGAATAAGGCAATGAACCAACCAAATGTTAGCAAGCCAAGTACCAGTAAGGGCCCTGAGAATCCAGAAAACCAGTAG 1494 0.5428 MDDHHEYPILAHSSRQKKPSIADDDDIMELLWHNGQVVMQSQNQRSLRNSDDASPSAPRENFNHHLFMQEGEMASWLHYPIDDDDPPFDQTFAADFLYSPPTVNNRSAMQTLGRTSQLTELRPMPPNPRPPIPPPRRPEQRTPNFAYFSRHNTRAAEPNVKTSARESTVVDSCDTPAATAAAAASRVSETVRSVAEPMEGGDCGAAAPSMSAGLGRSTMMCDLTMTSSPGGSSSSGEPVQAAAAAEDRKRKGREAEEWECQSEGVDFESEAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAAAHLGPRFPMPPFHMPHVPAPDSSRMQAANQSDNNMVTPVGPPDPNQSCIPNFTDPYQQYLGPHQMQFQLIQNKAMNQPNVSKPSTSKGPENPENQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0094 497 SMART finulus 291 340 IPR011598 GO:0046983
Aed4g0094 497 MobiDBLite consensus disorder prediction 1 20 - -
Aed4g0094 497 MobiDBLite consensus disorder prediction 41 60 - -
Aed4g0094 497 MobiDBLite consensus disorder prediction 472 497 - -
Aed4g0094 497 MobiDBLite consensus disorder prediction 243 277 - -
Aed4g0094 497 MobiDBLite consensus disorder prediction 115 141 - -
Aed4g0094 497 Gene3D - 280 343 IPR036638 GO:0046983
Aed4g0094 497 CDD bHLH_AtPIF_like 285 348 - -
Aed4g0094 497 Pfam Helix-loop-helix DNA-binding domain 289 335 IPR011598 GO:0046983
Aed4g0094 497 MobiDBLite consensus disorder prediction 425 449 - -
Aed4g0094 497 MobiDBLite consensus disorder prediction 419 449 - -
Aed4g0094 497 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 285 334 IPR011598 GO:0046983
Aed4g0094 497 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 8 496 - -
Aed4g0094 497 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 283 351 IPR036638 GO:0046983
Aed4g0094 497 MobiDBLite consensus disorder prediction 41 57 - -
Aed4g0094 497 MobiDBLite consensus disorder prediction 123 140 - -
Aed4g0094 497 MobiDBLite consensus disorder prediction 225 239 - -
Aed4g0094 497 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 8 496 IPR031066 -
Aed4g0094 497 MobiDBLite consensus disorder prediction 225 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0094 Aed-Chr4 617278 623342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0094 10 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 43.966 5.77e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed4g0094 HLH 6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0094 - - gmx:100797225 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0094 4 617278 623342 Aed4g0094 4 617278 623342 ECH