Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0084 ATGGCGGCGTCGCGGCGTCTCCGGGACCTCCAATCCCAATCGGCGAACAAGATCTGCGTGGACTGCTCCCAGAAGAATCCGCAATGGGCGTCGGTATCGTACGGAATATTCATGTGCCTAGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTCCGATCCGTCACAATGGACTCCTGGTCCGAAATCCAGATCAAGAAAATGGAATACGGAGGAAACGACAAACTCAACGCCTTCCTCTCCCAATACGGTATCTCCAAGGAAACCGACATCGTCGCAAAGTACAATTCCAACGCCGCCTCCGTCTACCGCGACCGCGTCCAGGCCCTCGCCGATGGTCGCCCCTGGCGGGATCCCCCCGTCGTCAAGAAATCCGTCGGTTCCTTACCCGCCTCCAAGAGGAGGCCGCCGGTCTCTGCCAACAACAACAACAACAGCGAATGGGATAATTGGGACGCTGATGACGGTTTTGGATCGGCGAAGAGCAGCTCGGAACTCCGGCGGAACCAGTCCACCGGCAATGTGAGGGGACACGGCGGCGGCGGGAGCGTGGCGAGGTCGAAGTCGACGGTGGATATTTATACACGCTCGGAGTTGGAGGCCTCTGCTGCTAACAAGGAAGAGTTCTTCGCGAGGAAGAGGGCGGAGAATGAGTCTCGACCGGATGGGCTTCCGCCGTCGCAGGGTGGCAAGTATGTTGGATTTGGATCTGCTCCTTCCCCGACCCAGAGGAATAATAATCAGCAAAACGATTATTTCTCTGTCGTTTCTCAGGGATTCGGCAAATTATCGCTGGCTGCTGCTTCTGCGGCCCAGTCTGCTGCTAATGTTGTTCAGTCCGGGACAAGAGATTTCACTTCTAAGGTAAAAGATGGCGGTTATGAATACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATTGGACATAGAACATGGGGTATCATGAGAGGGGTCATGGCATTGGCTTCACAAAAGGTTGAGGAATACACTAGAGATAACCCAAATTCAACGTCTAATAACTGGCAACAGAATGAAAATGGTTCCTATCAAGAGAATAATAAAGGCTGGGATTCTTCTACCAGAGAAGGACAACATTCTTCGGGTGGACAAACTAATACTTACAACTCAAGCTCTTGGGATGATTGGGACCACAAAGGTTCTAGGAAGGAAGAACCAGCTAAAGGATCATTTTCCCAGTCATCAGTTGGGAAGTCTGATACTTATAACTCGAGCTCTTGGGATGATTGGGATCATGAAAATACAAGAAAGAAAGAACCAGCTAAAGGATCAGCTACCCAGAGCAATGATGATTGGGCTGGATGGGATAATCCCAAAGATGATGATATCTATGGGAATGCATCTAATAATAAAGCTGTTGGTCATAATGAGAAGTCGGGTGTGGCCTGGACAGGAGGAGGCTTTCGCTAA 1455 0.5107 MAASRRLRDLQSQSANKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEYGGNDKLNAFLSQYGISKETDIVAKYNSNAASVYRDRVQALADGRPWRDPPVVKKSVGSLPASKRRPPVSANNNNNSEWDNWDADDGFGSAKSSSELRRNQSTGNVRGHGGGGSVARSKSTVDIYTRSELEASAANKEEFFARKRAENESRPDGLPPSQGGKYVGFGSAPSPTQRNNNQQNDYFSVVSQGFGKLSLAAASAAQSAANVVQSGTRDFTSKVKDGGYEYKVNETVNVVSQKTSEIGHRTWGIMRGVMALASQKVEEYTRDNPNSTSNNWQQNENGSYQENNKGWDSSTREGQHSSGGQTNTYNSSSWDDWDHKGSRKEEPAKGSFSQSSVGKSDTYNSSSWDDWDHENTRKKEPAKGSATQSNDDWAGWDNPKDDDIYGNASNNKAVGHNEKSGVAWTGGGFR 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0084 484 MobiDBLite consensus disorder prediction 218 252 - -
Aed4g0084 484 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Aed4g0084 484 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Aed4g0084 484 MobiDBLite consensus disorder prediction 338 389 - -
Aed4g0084 484 Pfam Putative GTPase activating protein for Arf 5 104 IPR001164 GO:0005096
Aed4g0084 484 CDD ArfGap_ArfGap1 3 117 - -
Aed4g0084 484 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Aed4g0084 484 MobiDBLite consensus disorder prediction 166 181 - -
Aed4g0084 484 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Aed4g0084 484 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Aed4g0084 484 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Aed4g0084 484 MobiDBLite consensus disorder prediction 117 193 - -
Aed4g0084 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 407 484 IPR044519 GO:0005096|GO:0016192
Aed4g0084 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 410 IPR044519 GO:0005096|GO:0016192
Aed4g0084 484 MobiDBLite consensus disorder prediction 402 419 - -
Aed4g0084 484 MobiDBLite consensus disorder prediction 338 484 - -
Aed4g0084 484 SUPERFAMILY ArfGap/RecO-like zinc finger 5 110 IPR037278 -
Aed4g0084 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 407 484 - -
Aed4g0084 484 MobiDBLite consensus disorder prediction 139 154 - -
Aed4g0084 484 MobiDBLite consensus disorder prediction 420 439 - -
Aed4g0084 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0084 Aed-Chr4 539929 545074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0084 5 87 C2H2 Transcription Factor Family AT4G21160 48.810 3.86e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0084 K12492 - gmx:100778302 775.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0084 4 539929 545074 Aed4g0084 4 539929 545074 ECH