Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0079 ATGGCTTTTATGTCTGGAGTTCAGCGTGTGCTTCGCCACACCCCACTCGTTCATTCCCACTATGCTTCCATTCGTCTCAGTTCAACTCTCACTTCCCCCAAACTTTTCGTCAGCGGTCTTTCTAGACTGACAACAGATGAAAAACTTAAGGAAGCATTTTCTTCTTTTGGGCAGCTGGTTGAAGCTAAGGTGATAACCGATAGAGCCTCTGGAAGATCAAAGGGATTTGCTTTTGTAACTTATACATCCATAGAAGAAGCTGATAAGGCAAGAGAAGGAATGAATGCTAAGTTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAGCCAAGAGAGCCTAGACCTCCTCAGCAATCACAGTCTCAGCCCTCTGAAACAGGTTTCACTGTCAACAAAACTGTTGGCTGGTGTGGTTGA 420 0.4452 MAFMSGVQRVLRHTPLVHSHYASIRLSSTLTSPKLFVSGLSRLTTDEKLKEAFSSFGQLVEAKVITDRASGRSKGFAFVTYTSIEEADKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSETGFTVNKTVGWCG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0079 139 Gene3D - 25 132 IPR012677 -
Aed4g0079 139 MobiDBLite consensus disorder prediction 109 139 - -
Aed4g0079 139 PANTHER NUCLEOLAR PROTEIN 8 1 139 - -
Aed4g0079 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Aed4g0079 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Aed4g0079 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
Aed4g0079 139 SUPERFAMILY RNA-binding domain, RBD 31 129 IPR035979 GO:0003676
Aed4g0079 139 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0079 Aed-Chr4 509845 511747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0079 35 126 Eukaryotic Initiation Factors Gene Family AT3G16380 37.895 4.29e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0079 - - gmx:100306326 248.054