Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0072 ATGAAGAGACAGAGAGATTTCGAGGGGTTTGAGAACATAGATTTGGCAAATTGTCTAATGCTTCTCTCTGGTCCCCAACAACAAATTAGTACTATGAAGCTACAACACCAAACAAAATTTGAGGCTGTGGAATTTGAGTGCAAGACATGCAACCGCAAGTTTTCGTCTTTTCAAGCATTGGGTGGCCATAGGGCTAGCCACAAAAGGTCGAAACTTGAGGGAGATCATGAACTCAAAGCACGTGATGCCATATCTCTTGGTTTGGGAAACAAACCTAAAATGCATGAGTGTTCCATTTGTGGACAAGAATTCTCATTGGGTCAAGCACTTGGGGGTCACATGAGAAGGCACAGAGCTGCAATTAACGAAGAATTTTCTTCAATAAAACAGGTTTTCACACAAGTACCGGTTTTGAAGAGATCGAATAGCACGAGGGTAATTAAGTGTTTGGACTTGAATCTTACACCGCTTGAGAATGACTTGAAGATTTTGTTTGGAAAGATGGCACCAAATGCTGGTGCCTTAGCCTGA 531 0.42 MKRQRDFEGFENIDLANCLMLLSGPQQQISTMKLQHQTKFEAVEFECKTCNRKFSSFQALGGHRASHKRSKLEGDHELKARDAISLGLGNKPKMHECSICGQEFSLGQALGGHMRRHRAAINEEFSSIKQVFTQVPVLKRSNSTRVIKCLDLNLTPLENDLKILFGKMAPNAGALA 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0072 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Aed4g0072 176 PANTHER ZINC FINGER PROTEIN ZAT5 12 171 - -
Aed4g0072 176 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Aed4g0072 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Aed4g0072 176 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Aed4g0072 176 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 12 171 - -
Aed4g0072 176 SMART c2h2final6 45 67 IPR013087 -
Aed4g0072 176 SMART c2h2final6 95 117 IPR013087 -
Aed4g0072 176 Gene3D Classic Zinc Finger 42 117 - -
Aed4g0072 176 Pfam C2H2-type zinc finger 45 69 - -
Aed4g0072 176 Pfam C2H2-type zinc finger 95 119 - -
Aed4g0072 176 SUPERFAMILY beta-beta-alpha zinc fingers 45 117 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0072 Aed-Chr4 457897 458427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0072 1 167 C2H2 Transcription Factor Family AT2G37430 52.299 2.36e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed4g0072 zf-C2H2_6 7.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0072 - - gmx:100527151 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0072 4 457897 458427 Aed4g0072 4 457897 458427 ECH