Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0071 ATGTTAGGAATGAAGAGACAACGAGATAACGTTGAAGGTTCATCACAGAGCTTGGATTTGGCAAAATGTCTTATGCTATTCTCGTGTCCACAAGAAAGCAATAACAAGGCACAACAGAAACGTACATTCGGGGCAGTAGTGGAATTTGAGTGCAAGACGTGCAACCGAAAGTTCTCATCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAGGCAGAAGCAGCAGCAGGTAGATGGGGAAGAACTGAAAGAAGAAGCCAAAAGTCTTAGCCTTTGGAACAAACCCAAAATGCACGAGTGCTCAATTTGTGGCCTTGAATTCTCTCTGGGCCAGGCTCTGGGTGGCCACATGAGAAAACACAGAGCTGCTGCAAATGCCATCAACGAGAAAGGGTTTTCCAATATTATTCCTTCTATCGAGCAAGTTATTGCGAAAATCCCAGTTCTGAAAAGGTCGAATAGCACCAGAGTCATGTGCTTGGATTTGGAGTTACACCTCTAG 507 0.4556 MLGMKRQRDNVEGSSQSLDLAKCLMLFSCPQESNNKAQQKRTFGAVVEFECKTCNRKFSSFQALGGHRASHKRQKQQQVDGEELKEEAKSLSLWNKPKMHECSICGLEFSLGQALGGHMRKHRAAANAINEKGFSNIIPSIEQVIAKIPVLKRSNSTRVMCLDLELHL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0071 168 Gene3D Classic Zinc Finger 46 122 - -
Aed4g0071 168 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Aed4g0071 168 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Aed4g0071 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Aed4g0071 168 SMART c2h2final6 100 122 IPR013087 -
Aed4g0071 168 SMART c2h2final6 49 71 IPR013087 -
Aed4g0071 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Aed4g0071 168 Pfam C2H2-type zinc finger 49 74 - -
Aed4g0071 168 Pfam C2H2-type zinc finger 100 124 - -
Aed4g0071 168 PANTHER ZINC FINGER PROTEIN ZAT5 4 168 - -
Aed4g0071 168 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 4 168 - -
Aed4g0071 168 SUPERFAMILY beta-beta-alpha zinc fingers 49 122 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0071 Aed-Chr4 452968 453474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0071 4 166 C2H2 Transcription Factor Family AT2G37430 43.529 5.04e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed4g0071 zf-C2H2_6 9.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0071 - - gmx:100526897 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0071 4 452968 453474 Aed8g0337 8 2798010 2798549 PCT