Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0068 ATGGAGACGCAGTGGATTATCGAGTTTCCGCATAGGAACATGGACAAGAGGCCAAGGAAGAAACAACGTTTGACATGGGACATGCACATGCACATGCCTCCTCCGCCTCCACCTCTTTTTCCACCCAAGTTGGAGATTCTTCCTACAATATATTGCAAGCAGGAGGTTGGGAATGGGGTGGTTCCAAATCATGCTTATCCATCTGTGTTTTACAGGGGAATGCCACGCAATGGATCACCCCCATGGAGGCCTGATGATAAAGACGGTCACTACGTATTTGCTGTTGGTGAAAATTTAACGCCTCGATACAAAATTCTCGGTAAAATGGGTGAAGGAACTTTTGGCCAAGTGGTGGAATGTTTCGACAATGAAAAGAAAGAAGTTGTGGCAATTAAAATTGTTCGCTCCATAAATAAGTACCGTGAAGCTGCAAGGACTGAAATTGAAGTCTTGCTGAGGCTAGCCAGACATGATGTTGATGGTGCACGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCTATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTATGTTTGATTCACACCGATCTGAAGCCAGAGAACATTCTTCTTGTCTCATCAGAATTCATTAAAGTGCCAGACTACAAGTTTCTTTCACGGAACACAAAAGATGGCTCCTATTTCAAGAATCTCCCCAAGTCAAGTGCCATTAAGCTCATTGATTTTGGGAGTACATCATTTGAACATCAGGATCACAGTTATGTTGTTTCAACAAGGCACTATCGTGCACCAGAAGTTATCTTAGGTCTTGGGTGGAACTATCCTTGTGATCTTTGGAGTGTGGGCTGCATACTGGTTGAGCTTTGCTCTGGAGAGGCACTTTTCCAAACACATGAGAACTTAGAACATCTTGCCATGATGGAGAGAGTTCTAGGGCCACTACCTCCCCATATGATGATTAGGGCTGATCGTCGAGCTGAAAAGTATTTTAAAAGAGGTATGCGATTAAGTTGGCCGGATAGTTCAACTTCAAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCACGCTTGCCGAACCTCATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTCTTACAAGGGCTTCTAAGGTACGACCCTGCAGAACGGCTTAAAGCTGAGGAAGCATTGAGACATCCCTTCTTCTTCACAAGAGATACTAGAAGATATGGCTACCCTTTATAA 1332 0.4309 METQWIIEFPHRNMDKRPRKKQRLTWDMHMHMPPPPPPLFPPKLEILPTIYCKQEVGNGVVPNHAYPSVFYRGMPRNGSPPWRPDDKDGHYVFAVGENLTPRYKILGKMGEGTFGQVVECFDNEKKEVVAIKIVRSINKYREAARTEIEVLLRLARHDVDGARCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLVSSEFIKVPDYKFLSRNTKDGSYFKNLPKSSAIKLIDFGSTSFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMMIRADRRAEKYFKRGMRLSWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAEEALRHPFFFTRDTRRYGYPL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0068 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Aed4g0068 443 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 435 - -
Aed4g0068 443 PANTHER BNAA07G37640D PROTEIN 1 435 - -
Aed4g0068 443 ProSiteProfiles Protein kinase domain profile. 103 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0068 443 CDD PKc_CLK 90 431 - -
Aed4g0068 443 Gene3D Phosphorylase Kinase; domain 1 90 183 - -
Aed4g0068 443 Pfam Protein kinase domain 103 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0068 443 SUPERFAMILY Protein kinase-like (PK-like) 90 434 IPR011009 -
Aed4g0068 443 Gene3D Transferase(Phosphotransferase) domain 1 157 431 - -
Aed4g0068 443 SMART serkin_6 103 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0068 Aed-Chr4 440721 445285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0068 103 431 Core Cell Cycle Gene Families AT1G76540 26.393 5.16e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Aed4g0068 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0068 K08287 - gmx:100808061 861.292