Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0048 ATGGGGAAGGGAGGCCAGGATTATGGGAAACGAGAGAACACGAGTTCTGAGGCTTCGGACCGTGAAATCTTCAAGGCGTGGTCGAAGGACGTGAGCGAGTGCGAGGAACACTTCAAGGTGAGTGTGAAGCTTGGTTTGAATCACGATGAGGTCGAGAATCGCCACAAGATCTATGGATTGAACGAGTTGGAGAAGCACGAGGGTCCATCGATATGGAGTTTAGTTCTGGACCAGTTCAACGACACGCTGGTTCGGATTCTCCTCGCAGCCGCCATCATATCCTTCGTGCTCGCGTGGTACGACGGCGACGAGGGCGGCGAGATGGAGATTACGGCGTTCGTGGAGCCTCTGGTGATATTCCTGATTCTAATCGTGAACGCAATTGTTGGCGTGTGGCAGGAGAGCAATGCGGAGAAGGCGTTGGACGCTCTCAAAGAGATTCAATCGGAGCACGCCGCGGTGGTTCGCGAGGGCAGGAAAATCCATAGTTTGCCGGCGAAGGATCTTGTTCCCGGCGACATCGTTGAGCTTAAGGTCGGGGATAAGGTGCCTGCGGATATGCGTGTTGTGGAATTGATCAGTTCCACTCTGCGAATGGAACAGGGTTCTTTGACCGGAGAGAGTGAAGCTGTGAATAAGACTAACAAGCGTGTGGATGAGGATGCTGATATTCAGGGGAAGAAGTGTATGGTTTTCGCTGGGACCACTGTTGTTAATGGGAATTGCATTTGCTTGGTCACTCAGACCGGCATGGAAACCGAGATTGGGAAGGTGCATAAGCAGATACACGTCGCCTCCCAGAGTGAGGAGGATACCCCGTTGAAGAAGAAGCTCAATGAGTTTGGAGAGAAACTAACCATGATAATTGGACTAATATGCATTTTGGTTTGGCTCATCAATGTTAAGTACTTCCTTACTTGGGAGTATGTGGATGGATGGCCCAGGAACTTCAAGTTTTCGTTCGAGAAGTGTACCTATTACTTTGAGATTGCTGTGGCACTGGCTGTGGCCGCCATTCCTGAAGGTTTGCCGGCAGTCATCACGACTTGCCTGGCTCTTGGTACCCGAAAGATGGCCCAGAAGAATGCCTTGGTCCGGAAGCTGCCAAGCGTGGAGACTCTGGGTTGTACCACTGTTATTTGTTCGGATAAAACTGGAACATTGACTACTAACCAAATGGCTGTGTCGAAATTAATTGCTATTGGCCATAAGTTGGACACACTGAGGGCCTTCAAGGTGGAAGGAACTACATACAATCCAGCTGACGGTCAAATAGATAATTGGTCAACTAATGGATTGGATGCTAATCTTCAGATGATTGCGAAAATAGCTGCAGTTTGTAATGATGCTGGAGTTTCGCAGTCAGAGCATAAGTTTGTCGCTCATGGAATGCCTACTGAAGCAGCGTTGAAGGTTTTGGTAGAGAAGATGGGCCTTCCCGAAGGATCCAAGGTTGTGCAATCAGGAAGCACCTTGCTGCGTTGTTGTGAATGGTGGAATGAGCATGACCGACGGCTTGCTACTCTTGAGTTTGACCGTGATAGGAAGTCGATGGGTGTTGTTGTGGACTCTGGTCTAAGCAAAAGGTCCCTTCTAGTTAAGGGTGCTGTAGAAAATGTGTTGGACAGAAGCTCTAAAATTCAGTTGCGTGATGGTTCTATTGTGAGACTAGATGATAATGCTAGGAACCTTGTATTGCAAGCTCTTCATGAAATGTCAACTAGCGCATTGCGCTGTTTGGGATTTGCATATAAGGATGAGCTCCCTGAATTTGAAAACTACAGTGGTAATGATGATCATCCAGCTCACCAGCTTTTGCTTAATCCTTCCAACTATTCATCAATTGAAAGTGAACTTATTTTTGTTGGCCTGGTTGGATTGAGGGATCCTCCTAGGGAGGAAGTATACCAAGCAATTGAAGACTGTAGAGAAGCTGGAATTCGAGTTATGGTTATAACTGGAGACAACAAGAACACAGCTGAAGCTATATGCCGTGAAATAGGTGTATTTTCGCCTGATGAAGACATTAGTTCTAAAAGTTTAACCGGTAAAGATTTTATGGAACTGCGTGACAAAAAGGCCTATCTGAGACAGAGTGGCGGGCTTTTGTTTTCAAGGGCTGAACCTAGGCACAAGCAAGACATTGTGAGGCTGCTCAAAGAGGATGGCGAGGTGGTGGCCATGACTGGGGATGGTGTTAATGATGCACCTGCCTTGAAGCTTGCAGACATTGGTATTGCAATGGGGATTGCAGGGACCGAGGTGGCAAAGGAAGCTTCAGATATGGTCTTGGCAGATGATAATTTTAGTTCAATTGTTGCTGCTGTTGGTGAGGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGGTATATGATCTCTTCCAATATTGGCGAGGTTGCTTCTATATTTTTGACAGCTGCATTAGGTATTCCTGAAGGATTGATACCTGTCCAGCTTCTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACAGCTTTGGGATTTAATCCTCAAGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCATTAATTAATTTGTGGATTTTATTCCGCTATCTGGTTATTGGGATTTATGTTGGATTAGCTACAGTTGGTATCTTCATCATTTGGTATACACATGGTTCCTTCTTTGGTATTGACCTTAGTGGGGATGGACATACTCTTGTCACTTACTCCCAACTTGCTAACTGGGGCCAATGCTCCACATGGAATAACTTCACTGCTTCCCCATTCACTGCTGGTGCTAAAACTATCACGTTTGACAACCCCTGTGATTACTTTTCAACTGGTAAAGTGAAAGCCATGACTCTGTCCCTTTCTGTGTTGGTAGCCATTGAAATGTTCAACTCTCTCAATGCCCTATCGGAAGATGGAAGCCTTTTGACAATGCCCCCTTGGGTCAACCCTTGGCTTCTTTTGGCAATGTCAGTATCATTTGGTCTGCACTTTTTGATCTTGTACGTGCCATTCTTAGCCCAAGTATTTGGTATCGTACCCCTGAGCATCAACGAGTGGCTTTTGGTTTTGGTTGTTGCACTTCCGGTCATTCTAATTGACGAGATTCTGAAATTTGTGGGGAGGAGTACAACTTCTCGAGCATCTAGGGAAAGAAAATCAAAGCAAAAAGCAGAGTAG 3177 0.4614 MGKGGQDYGKRENTSSEASDREIFKAWSKDVSECEEHFKVSVKLGLNHDEVENRHKIYGLNELEKHEGPSIWSLVLDQFNDTLVRILLAAAIISFVLAWYDGDEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALDALKEIQSEHAAVVREGRKIHSLPAKDLVPGDIVELKVGDKVPADMRVVELISSTLRMEQGSLTGESEAVNKTNKRVDEDADIQGKKCMVFAGTTVVNGNCICLVTQTGMETEIGKVHKQIHVASQSEEDTPLKKKLNEFGEKLTMIIGLICILVWLINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLIAIGHKLDTLRAFKVEGTTYNPADGQIDNWSTNGLDANLQMIAKIAAVCNDAGVSQSEHKFVAHGMPTEAALKVLVEKMGLPEGSKVVQSGSTLLRCCEWWNEHDRRLATLEFDRDRKSMGVVVDSGLSKRSLLVKGAVENVLDRSSKIQLRDGSIVRLDDNARNLVLQALHEMSTSALRCLGFAYKDELPEFENYSGNDDHPAHQLLLNPSNYSSIESELIFVGLVGLRDPPREEVYQAIEDCREAGIRVMVITGDNKNTAEAICREIGVFSPDEDISSKSLTGKDFMELRDKKAYLRQSGGLLFSRAEPRHKQDIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSSIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPQDKDIMKKPPRRSDDSLINLWILFRYLVIGIYVGLATVGIFIIWYTHGSFFGIDLSGDGHTLVTYSQLANWGQCSTWNNFTASPFTAGAKTITFDNPCDYFSTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSINEWLLVLVVALPVILIDEILKFVGRSTTSRASRERKSKQKAE 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0048 1058 SUPERFAMILY Calcium ATPase, transduction domain A 152 261 IPR008250 -
Aed4g0048 1058 MobiDBLite consensus disorder prediction 1 20 - -
Aed4g0048 1058 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Aed4g0048 1058 SUPERFAMILY HAD-like 379 833 IPR036412 -
Aed4g0048 1058 Gene3D - 45 265 - -
Aed4g0048 1058 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 627 IPR023299 GO:0000166
Aed4g0048 1058 SFLD p-type atpase 362 781 IPR044492 -
Aed4g0048 1058 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Aed4g0048 1058 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 1053 - -
Aed4g0048 1058 PRINTS P-type cation-transporting ATPase superfamily signature 729 748 - -
Aed4g0048 1058 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Aed4g0048 1058 PRINTS P-type cation-transporting ATPase superfamily signature 753 765 - -
Aed4g0048 1058 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Aed4g0048 1058 PRINTS P-type cation-transporting ATPase superfamily signature 623 634 - -
Aed4g0048 1058 PRINTS P-type cation-transporting ATPase superfamily signature 645 655 - -
Aed4g0048 1058 Pfam E1-E2 ATPase 148 361 - -
Aed4g0048 1058 Gene3D - 391 630 IPR023299 GO:0000166
Aed4g0048 1058 SFLD C1.7: P-type atpase like 362 781 - -
Aed4g0048 1058 Pfam Cation transporting ATPase, C-terminus 814 1039 IPR006068 -
Aed4g0048 1058 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 320 403 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0048 1058 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 703 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0048 1058 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0048 1058 Gene3D - 378 774 IPR023214 -
Aed4g0048 1058 Pfam haloacid dehalogenase-like hydrolase 378 743 - -
Aed4g0048 1058 Gene3D - 77 1041 - -
Aed4g0048 1058 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1042 IPR023298 -
Aed4g0048 1058 Coils Coil 137 157 - -
Aed4g0048 1058 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Aed4g0048 1058 PANTHER CALCIUM-TRANSPORTING ATPASE 4 1053 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0048 Aed-Chr4 316291 323096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0048 1 1058 Primary Pumps ATPases(2) AT1G07670 79.736 0.0 1743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0048 K01537 - gmx:100788807 1996.48