Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0039 ATGGTTAGATCCTGTTGGAGGCCAGCTGTGGTGGGTGATGATGGAGATATGAATGGTCGAGTTGAGGGGCTGCTATGGCACAAAGATTTGGGGAACCATCTTTATGGGGATTTCTCAATGGCTGTGATTCAAGCTAATAGTTCATTGGAGGATCGAAGCCAACTTGAATCTGGACCCTTAACTTCTGACTATTTGGGTCCTCAAGGAACCTTCATAGATTTCGCTGCTGAAAATGAAGGAATCATTTCGGAGAATGTTATAAGAAAGGCCTATTCAGAAACAGAAGAGGGTTTTCTGTCTGTTGTGAGGAAACAGTGGCAAAGCAAGCCACAGGTAGCATCCGCAGGAACATGTTGTTTAGCGGGGATAATTTGCAATGGCATGCTATACGTTGCCAACGCCGGAGACTCGAGGGCGGTGTTGGGGAGAGTAGAGAGAGCAACAAGGGAAACCACAGCTATCCAATTGTCTGCAGAGCACAACGTTAACATCCAAACTGAAAGAGACGATGTTCGGACAAAGCACTCTTATGATCCTCAAATCGTGGTTATGAAACACAACGTTTGGCGTGTTAAAGGCATCATTCAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGACGAATTTAACAGGGAGCCTCTACCGAACAAGTTTAGATTACCTGAACCGTTCTATAAGCCAATTCTTAGCCATGAACCAGCAATATCAGTGCACAAACTTCGTCCTGAAGATCAATTTATTGTCTTTGCTTCTGATGGCTTATGGGAGCAACTCAGCAACCAAGAGGTGGTGAACATAGTCAGCACTAGCCCAAGAAATGGAATTGCGAGGCGGCTTGTGAAAGCTGCACTGCGAGTGGCGGCTAGGAAGAGAGAAATGAGAGTTTCAGACCTTCAGAAGATTGAACAAGGAGTGAGGAGACACTTCCACGATGATATTACAATCATTGTTGTATTTCTAAATCACAAACTCATTGATAATAGCTCTCTCTTGGCTTCTCCTCTTTCAATCAGAGGAGCCAATTGTTAG 1035 0.4435 MVRSCWRPAVVGDDGDMNGRVEGLLWHKDLGNHLYGDFSMAVIQANSSLEDRSQLESGPLTSDYLGPQGTFIDFAAENEGIISENVIRKAYSETEEGFLSVVRKQWQSKPQVASAGTCCLAGIICNGMLYVANAGDSRAVLGRVERATRETTAIQLSAEHNVNIQTERDDVRTKHSYDPQIVVMKHNVWRVKGIIQVSRSIGDAYLKKDEFNREPLPNKFRLPEPFYKPILSHEPAISVHKLRPEDQFIVFASDGLWEQLSNQEVVNIVSTSPRNGIARRLVKAALRVAARKREMRVSDLQKIEQGVRRHFHDDITIIVVFLNHKLIDNSSLLASPLSIRGANC 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0039 344 Pfam Protein phosphatase 2C 84 291 IPR001932 -
Aed4g0039 344 SMART PP2C_4 27 320 IPR001932 -
Aed4g0039 344 ProSiteProfiles PPM-type phosphatase domain profile. 34 322 IPR001932 -
Aed4g0039 344 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 74 342 - -
Aed4g0039 344 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 3 73 - -
Aed4g0039 344 CDD PP2Cc 84 322 IPR001932 -
Aed4g0039 344 Gene3D - 30 331 IPR036457 -
Aed4g0039 344 SUPERFAMILY PP2C-like 76 323 IPR036457 -
Aed4g0039 344 PANTHER ALPHABET, ISOFORM E-RELATED 74 342 - -
Aed4g0039 344 PANTHER ALPHABET, ISOFORM E-RELATED 3 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0039 Aed-Chr4 275913 278453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0039 1 342 PP2C-type Phosphatase Gene Family AT3G12620 61.247 6.18e-162 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0039 K01102 - gmx:100815902 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0039 4 275913 278453 Aed4g0039 4 275913 278453 ECH
Aed4g0039 4 275913 278453 Aed8g0360 8 2957957 2961097 PCT