Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0029 ATGCCTCCGAAGCAGCAATCAAAAGCTGATCTTGCGAAGAAGCAGAAGGTCGTAGAGGATAAAACCTTCGGTCTCAAAAACAAGAACAAGAGCAAAAATGTCCAGAAATACGTCCAGAACCTCAAGCAATCCGTGGAACCAAGACTCGACCCTTCAAAACTTGCTGCCAAGAAAAAGAAGGAGGAAGATAAGGCCAAGGACAAGGAGTTAAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAGGTGCCAGTTGGTGTGGATCCTAAGTCCATTTTGTGTGAGTTTTTTAAAGTGGGGCAATGTACCAAAGGCTTCAAGTGCAAGTTCTCTCACGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTATAGTGATAAGCGTGACGAGGATACAATGGAAGATTGGGATCAAGAGACCTTGGAGAAGGTAGTGCAGTCGAAACAAAATGAGTATAATCAGAACAAACCAACTGACATAGTGTGTAAATACTTTTTGGAAGCAGTGGAGAAGAAGCAATATGGTTGGTTCTGGGACTGCCCCAATGGCGGTAAGAATTGTCACTATAGACATGCCCTTCCCCCTGGATATGTTTTAAAATCTCAAATGAAGGCTCTATTAGAGGCGGAATCTGAAAAAATAACAGTAGAGGAGGAGATTGAAAATCAGGTGAAAATGTTTTTTTCTACAATGAGCTATGCCACTTGA 714 0.4132 MPPKQQSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQNLKQSVEPRLDPSKLAAKKKKEEDKAKDKELNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCTKGFKCKFSHDLNVQRKGEKIDIYSDKRDEDTMEDWDQETLEKVVQSKQNEYNQNKPTDIVCKYFLEAVEKKQYGWFWDCPNGGKNCHYRHALPPGYVLKSQMKALLEAESEKITVEEEIENQVKMFFSTMSYAT 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0029 237 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Aed4g0029 237 Coils Coil 201 228 - -
Aed4g0029 237 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 226 - -
Aed4g0029 237 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Aed4g0029 237 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 226 - -
Aed4g0029 237 MobiDBLite consensus disorder prediction 40 63 - -
Aed4g0029 237 Gene3D - 87 202 - -
Aed4g0029 237 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Aed4g0029 237 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Aed4g0029 237 SMART c3hfinal6 88 114 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0029 Aed-Chr4 227881 229631 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed4g0029 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0029 - - gmx:100806617 411.764