Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0027 ATGGCAATGGCACCCTCAACTTCCACAAGTGGCGGGTCTGGCAAGAAGATTAGAAAGCCTTATACTATTACCAAGTCTAGGGAAAGCTGGTCTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTTGGTTCAAAAACAGTTATTCAGATTAGAAGCCATGCCCAGAAGTACTTCTTGAAAGTTCAGAAGAACGGGACAGTAGCACATGTGCCTCCTCCTCGGCCTAAGCGCAAAGCTTCTCATCCTTATCCACAAAAGGCATCAAAAAATGTTTTGTTGCCATTTCCAGCTTCCATGGATTATGTTTCTTCCGCTAGTATCCTTCCACCTGGGTATCTCACATGGGATGAAAATTCCTTGCTCATGAATTCTGGGTTCAATCTTCATGGAAATGAAGGCATGCATGCTTTTTTTCCTGATATTGGATCTAAGGGAATAACACGAATTGGGAACTCTACTAGAAACCTGTCTGCTACTGAGATGCCAAAACAAGGGAAACAGGCTCAGGTGATTCATGGTTTGCCAGATTTTGCTCAAGTTTACAGTTTCATTGGAAGTGTCTTTGATCCGGATTCAATAGGCCATGCCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGCTGCTAATGAAAAACCTCACTATCAACATGTCTAATCCTGACTTTGAGCCCATTAGGAAGGTCATGTCATCATACGATGTCAATGCAAATACAGGAATTGACGTCAAGAAGCAGACAAATAATGATCTATCATGTCAAACAGCTTGA 822 0.4136 MAMAPSTSTSGGSGKKIRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKASHPYPQKASKNVLLPFPASMDYVSSASILPPGYLTWDENSLLMNSGFNLHGNEGMHAFFPDIGSKGITRIGNSTRNLSATEMPKQGKQAQVIHGLPDFAQVYSFIGSVFDPDSIGHAQKLKEMDPINFETVLLLMKNLTINMSNPDFEPIRKVMSSYDVNANTGIDVKKQTNNDLSCQTA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0027 273 SMART sant 26 74 IPR001005 -
Aed4g0027 273 CDD SANT 29 72 IPR001005 -
Aed4g0027 273 ProSiteProfiles Myb-like domain profile. 22 72 IPR001005 -
Aed4g0027 273 MobiDBLite consensus disorder prediction 1 15 - -
Aed4g0027 273 PANTHER PROTEIN REVEILLE 8 4 265 - -
Aed4g0027 273 SUPERFAMILY Homeodomain-like 21 77 IPR009057 -
Aed4g0027 273 MobiDBLite consensus disorder prediction 80 99 - -
Aed4g0027 273 MobiDBLite consensus disorder prediction 1 27 - -
Aed4g0027 273 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 25 74 IPR006447 GO:0003677
Aed4g0027 273 ProSiteProfiles SANT domain profile. 25 78 IPR017884 -
Aed4g0027 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 76 IPR017930 -
Aed4g0027 273 Pfam Myb-like DNA-binding domain 27 72 IPR001005 -
Aed4g0027 273 PANTHER SWI/SNF COMPLEX-RELATED 4 265 - -
Aed4g0027 273 Gene3D - 30 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0027 Aed-Chr4 220792 222612 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed4g0027 Myb_DNA-binding 9.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0027 - - gmx:100807156 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0027 4 220792 222612 Aed8g0369 8 3051275 3057472 PCT