Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0026 ATGGCAGCAGCAGCAGCTCGCCCTCTCGTATCCGTCCAAACCCTAGAGGACGATGCAGCCCCCACCGTCCCCCTCCCCGACGTCATGAAGGCCTCAATCCGCCCCGACATTGTCAATTTCGTCCACTCCAACATTTCCCGCAACAGCCGCCAGCCCTACGCCGTCAGCAAGCGCGCCGGCCACCAGACCTCCGCCGAGTCATGGGGCACCGGCCGCGCCGTCTCGCGTATCCCTCGCGTCCCCGGTGGCGGCACACACCGCGCAGGCCAGGGAGCCTTCGGCAACATGTGCCGCGGCGGCCGCATGTTCGCCCCGACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTCCAGCAGAAGCGACACGCCGTGGTCTCCGCCATCGCCGCCTCCGCAATCCCCTCCCTCGTCCAGGCCCGCGGCCACCGCATCGAGTCCGTCCCGGAGCTCCCCCTCGTCGTTAGCGACACCATCGAAAGTGTCGAGAAATCCAAAGAAGCGGTGAAGGTTCTTCAGAAAATCGGCGCATTCCCCGACGCGGAGAAAGCGAAACTCAGCCACGGAATTCGCCCCGGGAAGGGTAAAATGAGGAACCGCAGGTACATCTCACGCAAGGGTCCTCTCATCGTGTACGGAACAGAAGGTTCCAAGGCCGTTAAAGCCTTCAGGAACATTCCCGGTGTTGAGGTAGCAAACGTTGATAGGCTCAACCTTCTGAAGCTCGCACCCGGTGGCCACCTCGGAAGGTTCATTATTTGGACCAAGTCCGCTTTCGAGAAACTTGACTCCATTTATGGATCGTTCGATAAGGCCTCCGAGAAGAAAAAGGGCTACCTGCTTCCCAGGCCCAAGATGGTTAACTCAGACCTGGCCCGCATCATTAACTCCGATGAGGTCCAGTCCGTGGTGAGGCCCATTAAGAAAGATGTTAAGAGAGCACCACTTAAGAAGAACCCTCTCACGAACCTCAATGCGATGTTGAAGCTCAACCCCTACGCTAAGACCGCTAAGAGAATGGCTCTTCTCGCTGAGAAACAACGCATTGTGGCTAAGAAGGAGAAGCTTGATAAGAAGCGCAGCATTGTTCCCAAGGAGGAGGCTTCTGCTATCAAAGCTGCTGGGAAATCGTGGTATCAAACTATGGTGTCCGACTCTGATTATGCAGAATTTGACAACTTTTCTAAGTGGCTAGGTGTTTCCCAGTAA 1209 0.5724 MAAAAARPLVSVQTLEDDAAPTVPLPDVMKASIRPDIVNFVHSNISRNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVQQKRHAVVSAIAASAIPSLVQARGHRIESVPELPLVVSDTIESVEKSKEAVKVLQKIGAFPDAEKAKLSHGIRPGKGKMRNRRYISRKGPLIVYGTEGSKAVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKASEKKKGYLLPRPKMVNSDLARIINSDEVQSVVRPIKKDVKRAPLKKNPLTNLNAMLKLNPYAKTAKRMALLAEKQRIVAKKEKLDKKRSIVPKEEASAIKAAGKSWYQTMVSDSDYAEFDNFSKWLGVSQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0026 402 Pfam Ribosomal protein L4/L1 family 23 263 IPR002136 GO:0003735|GO:0005840|GO:0006412
Aed4g0026 402 SUPERFAMILY Ribosomal protein L4 9 264 IPR023574 GO:0003735|GO:0005840|GO:0006412
Aed4g0026 402 PANTHER BNAC03G35890D PROTEIN 3 402 - -
Aed4g0026 402 Gene3D - 4 305 IPR023574 GO:0003735|GO:0005840|GO:0006412
Aed4g0026 402 Pfam 60S ribosomal protein L4 C-terminal domain 277 348 IPR025755 -
Aed4g0026 402 PANTHER 60S RIBOSOMAL PROTEIN L4 3 402 IPR045240 -
Aed4g0026 402 MobiDBLite consensus disorder prediction 52 70 - -
Aed4g0026 402 ProSitePatterns Ribosomal protein L1e signature. 117 143 IPR013000 -
Aed4g0026 402 MobiDBLite consensus disorder prediction 52 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0026 Aed-Chr4 216964 218844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0026 1 402 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 80.296 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0026 K02930 - gmx:100796712 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0026 4 216964 218844 Aed8g0370 8 3058806 3061456 PCT