Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0025 ATGCTGGATCTCAACCTCAACGCCGATTCTGCCTCCGACACGCCGCCGCTCTCCGCCGCGCAAATGGAGAGCTCCAGCAGCTTCAATTCCTCCGTCGTCAATGCCGCCGACACCGACGACTCCTGCTCCTACGGCGACGCCGTCGCCTACAACTTCGCCATCCTCAACACCACCACCACCGCCGCCGTCGACGACGCTGCCACCTCAGTCACCGGAGAATCCTCCGTTCGCACCATCCAGCTCTTTCCTGCGGCCGAATCAGGCGTCTCGCCGGCGTGGCTGGACTTCTCGTCGAAGGTTGTTGTTGATCAGCACGGTGCTCCGCCGGAGCAGAGGATCCCTTCGCGGCAACCGCAGGTGAAGAAGAGCCGCCGCGGACCGAGGTCGCGGAGCTCGCAATATCGCGGCGTCACTTTCTATCGCAGAACCGGAAGATGGGAATCGCACATTTGGGACTGTGGGAAACAAGTGTACTTGGGTAAGGACGCAAGTGGATTTGACACAGCGCATGCTGCAGCGAGGGCGTATGATCGAGCTGCGATCAAGTTCCGTGGGGTTGATGCGGATATCAATTTCAACGTTAGCGATTACGATGAAGATATCAAGCAGATGAGTAACTTCACGAAGGAGGAGTTTGTGCACATTCTGCGGAGACAGAGTACTGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAGTGCGGGCGATGGGAGGCTCGTATGGGGCAGTTCCTTGGTAAAAAGTATATATATCTTGGGCTATTCGACAGCGAATTAGAGGCTGCAAGAGCGTATGATAAGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTGACAAACTTCGAGCCCAGCTTGTATGAAGGGGAGGTAATTTCCCAGTCAGATAATGAAGAGAGCAAGCAAAGTCTTGATCTGAACTTGGGCATAGCTCCCCCTTCTTACTCTGATGGTCAAATCAAGAACACACCCAGCAACGGGAGTGGTATGAAAGCTCCTCACAGCTGGGAAGATATACCTGTCGATAAGAGAGTTATGTTTGAGCACTCTGAATCAAGATCACTGACTGTTCAGCCATCTCATGGCTTCTCCATAGCATCTGGGCAGCAACATCCTTCCGTCTGGAATGGCAGCAATTTCTTTCCCATCTACGAGGAAACAGCAATAGAGAAGAGGGTGGTGGAAGCTGGTCCCATGCAAAATTGGGCATGGCAAGGCCAAGGTCCTTATGGCGGGGCAACTCTAACTCCACCCTTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGACACTCAAATTCGTTTTCCAAACATGAGATTCCTCCACTCACATTTTCCACAAACAATCACTAACTCCGGCACCATATCATCCCCTTTCTTCTGCGGTAGCTGA 1422 0.5246 MLDLNLNADSASDTPPLSAAQMESSSSFNSSVVNAADTDDSCSYGDAVAYNFAILNTTTTAAVDDAATSVTGESSVRTIQLFPAAESGVSPAWLDFSSKVVVDQHGAPPEQRIPSRQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGKDASGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDKAAIKCNGREAVTNFEPSLYEGEVISQSDNEESKQSLDLNLGIAPPSYSDGQIKNTPSNGSGMKAPHSWEDIPVDKRVMFEHSESRSLTVQPSHGFSIASGQQHPSVWNGSNFFPIYEETAIEKRVVEAGPMQNWAWQGQGPYGGATLTPPFSTAASSGFPSTIIPSAADTQIRFPNMRFLHSHFPQTITNSGTISSPFFCGS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0025 473 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 462 - -
Aed4g0025 473 Pfam AP2 domain 228 278 IPR001471 GO:0003700|GO:0006355
Aed4g0025 473 Pfam AP2 domain 133 185 IPR001471 GO:0003700|GO:0006355
Aed4g0025 473 ProSiteProfiles AP2/ERF domain profile. 133 193 IPR001471 GO:0003700|GO:0006355
Aed4g0025 473 MobiDBLite consensus disorder prediction 7 23 - -
Aed4g0025 473 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 462 - -
Aed4g0025 473 MobiDBLite consensus disorder prediction 1 23 - -
Aed4g0025 473 ProSiteProfiles AP2/ERF domain profile. 229 286 IPR001471 GO:0003700|GO:0006355
Aed4g0025 473 CDD AP2 228 288 IPR001471 GO:0003700|GO:0006355
Aed4g0025 473 Gene3D AP2/ERF domain 132 195 IPR036955 GO:0003700|GO:0006355
Aed4g0025 473 Gene3D AP2/ERF domain 228 287 IPR036955 GO:0003700|GO:0006355
Aed4g0025 473 MobiDBLite consensus disorder prediction 104 134 - -
Aed4g0025 473 SMART rav1_2 229 292 IPR001471 GO:0003700|GO:0006355
Aed4g0025 473 SMART rav1_2 133 199 IPR001471 GO:0003700|GO:0006355
Aed4g0025 473 SUPERFAMILY DNA-binding domain 228 287 IPR016177 GO:0003677
Aed4g0025 473 SUPERFAMILY DNA-binding domain 132 195 IPR016177 GO:0003677
Aed4g0025 473 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
Aed4g0025 473 PRINTS Ethylene responsive element binding protein signature 268 288 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0025 Aed-Chr4 207868 210151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0025 117 353 AP2-EREBP Transcription Factor Family AT4G36920 69.583 8.51e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aed4g0025 AP2 4.4e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0025 K09284 - gmx:100808212 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0025 4 207868 210151 Aed4g0025 4 207868 210151 ECH