Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0024 ATGGCCGACGGTCCGGCGAGCCCAGGCGGCGGCAGCCACGAGAGCGGCGACCACAGCCCTCGCTCTAACGTGCGCGAGCAGGACAGGTACCTTCCCATCGCTAACATAAGCCGCATCATGAAGAAGGCGCTACCCGCCAACGGTAAAATCGCCAAGGACGCCAAAGAAACCGTTCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAAAAGAGAAAGACTATTAACGGTGATGATTTGCTCTGGGCAATGGCCACTCTCGGTTTCGAGGATTACATCGATCCTCTTAAAATTTACCTCTCTAGATACAGAGAGGGTGATACCAAGGGCTCAGGCAAGGGTGGAGACTCATCTGCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTACATACACGAATTCTCAGGCCTGTCTTTCTCAGTTTGGTAGGGCACTGAATGGTGTTGGAAATTCTTCCTCCTTAATGGATTGGTCAACATATGATGGTCCCAATGCAAGGGCCAGAGTAGGTATCAAATTCAAGGCTATTAACCCTCCTGTTGTTACACGTATGTTTTCTACGCCAGTTAGCAAGTGTCTTTTTATGTTATGTGAATACTGA 666 0.491 MADGPASPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREGDTKGSGKGGDSSAKKDVQPSPNAQLAHQGSFSQGVTYTNSQACLSQFGRALNGVGNSSSLMDWSTYDGPNARARVGIKFKAINPPVVTRMFSTPVSKCLFMLCEY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0024 221 Gene3D Histone, subunit A 16 151 IPR009072 GO:0046982
Aed4g0024 221 MobiDBLite consensus disorder prediction 117 142 - -
Aed4g0024 221 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aed4g0024 221 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Aed4g0024 221 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Aed4g0024 221 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Aed4g0024 221 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Aed4g0024 221 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aed4g0024 221 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 157 - -
Aed4g0024 221 MobiDBLite consensus disorder prediction 1 28 - -
Aed4g0024 221 SUPERFAMILY Histone-fold 27 129 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0024 Aed-Chr4 186122 196835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0024 17 158 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.081 5.34e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed4g0024 CBFD_NFYB_HMF 1.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0024 K08065 - gmx:100820170 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0024 4 186122 196835 Aed8g0373 8 3092024 3094961 PCT