Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0023 ATGTTTAGCCGTGTAAGGCCCGGCCTTATTGCTATAAAAAAACCCAGAATTGGCACAGTATTAATTTACTTTCTCAAATTTCCCGCCAAGAAAAAGAAGCTCGGTCGCCAAAAGCCGTGGAAGAAAAGAAAGGGCGGCGTACGTCGGAAACGGATGCACGGAACACCAGAAGATGAAACGGAGCAGATGATCGGGTACGGTATTGGACCCGTATCCGCATCCATGCACCCATTCGGGCTAATGGATATACTTGACACTTACTTTCCTCAGCAACTCCTCACCGTCGAAGAAACCTGGCTCAATCTCACTTCTGCTCTTCTCTCCTTCTTCTCTTCGCGGCCGGGACAAAACCTCGTTTCTCAGGTGAAAAATGATTATGGAAACTATGTCTTGTCACTTGACTTTCAGCAGTTCAAACAGATGAATGTTGAGGAATTTAATGAAATGTTAATGGAGAAACCTAAAATTGCTCTCTTATGCATGAGTGCTGCCGTTCATAAGGTTTTGCTTTCCAAATGGGAGAATTTCCATCTGGAGCTTGGTGCAAAGGTAGCTATTCGTCTTCATAACTGTCCTGAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTATATTGACAAGCTTGTCTCAGTTCGTGGTACTGCGGTGAAAGTCAGCACTGTCAGGCCTCTGGTGGTGGAAATGAGTTTTGAATGCAGTAAATGTAAACAAACAATTACACGTGTATTTCCTGATGGAAAATATTCTCCACCATCTACATGCAATTTGAATGGCTGCAAGAGCAAAATCTTTAATCTGTTGCGATCTACTGCTCAAACCATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAGCCTGAAGACCATGAAGAAGGACGGGTGCCTCGAACAGTGGAATGTGAGCTTACCCAAGATCTCGTTGATGCGTGCATACCTGGAGATGTGGTGACTGTTACTGGAATTATAAGAGGAATTAACAATTACATGGATATTGGAGGAGGGAAGTCAAAGAACAAAAACCAAGGATTTTATTATTTGTACCTTGAAGCTGTATCCATAAAAAATTCAAAGTCACAGTCCGTACCTGAGGATTTGCAAGACTCTAATCCCATAGCTAGATCAACTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGTGAAGTTTGCGCAGGAGAATGGTTCAGATTTATTTCGGCAAATCCTTCAATCTATATGCCCATCCATTTTTGGGCATGAGCTTGTTAAAGCTGGGATAACTCTGTCATTATTTGGTGGTGTACGAAAGCATTCTATGGATCAGAATAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTAGGTGATCCTGGCCTAGGTAAGAGCCAATTGCTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTATGTGGTAATGCCACAACAAAAGCTGGCCTCACAGTAGCAGTAGTGAAGGATGCTATGACTGGTGACTATGCTTTTGAGGCAGGTGCTATGGTGCTGGCTGACAGTGGACTGTGCTGTATTGATGAGTTTGATAAAATGTCAACAGAGCATCAGGCTTTACTTGAGGCGATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGATTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCGGCTGCAAACCCTGCTGGTGGTCACTACAACCGAGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCTCGTTTTGATTTGATTTTTATACTGCTGGATAAACCTGATGAACTTCTGGACAAGCGACTCTCGGAGCACATTATGGCAAATGCCGAAGGTGTTGATCTGGGCGTTAGATCTGGATCTTTAATTTCAAGGTTGAGACTTGACCCGCTAAGAGACAGTGACTTTGTTCCATTACCCGGTCAACTTCTTCGCAAATACATTACTTATGCAAGGAGTTTCGTCTTTCCTAGGATGACAAAGCCAGCAGCAGAAATATTGCAAAAGTTTTACCTAAAACTGAGAGATCATAATACTTCAGCGGACGGTACTCCAATCACAGCTAGGCAGCTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGGGCTCGGCTGGACTTGAGAGTAGAAATAACGCCGCAGGATGCAACGGATGTTGTTGAAATCATGAAGGAATCCCTGTATGATAAATATGTTGATGAGCATGGTGTCGTGGATTTTGGTCGAAGTGGTGGGATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCCCTCAACAAGCAATCGGAACTGGAACAGAAGGATTGCTTTTCAGTATCTGAAATATATAGTCTGGCAGATAGGATTGCTCTGAAAGTTCCTGATATTGACGCTTTCATCGAAAATTTAAACAGTGTTGGTTATCTACTCAAAAAAGGACCAAAGACATACCAGGTTTTATCCTCTTCCTATGCACGAAGCCAACCGTTTAAGACAAGGGGCTAA 2499 0.4242 MFSRVRPGLIAIKKPRIGTVLIYFLKFPAKKKKLGRQKPWKKRKGGVRRKRMHGTPEDETEQMIGYGIGPVSASMHPFGLMDILDTYFPQQLLTVEETWLNLTSALLSFFSSRPGQNLVSQVKNDYGNYVLSLDFQQFKQMNVEEFNEMLMEKPKIALLCMSAAVHKVLLSKWENFHLELGAKVAIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFECSKCKQTITRVFPDGKYSPPSTCNLNGCKSKIFNLLRSTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINNYMDIGGGKSKNKNQGFYYLYLEAVSIKNSKSQSVPEDLQDSNPIARSTELFDLFSFSSKDLEFVVKFAQENGSDLFRQILQSICPSIFGHELVKAGITLSLFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDAMTGDYAFEAGAMVLADSGLCCIDEFDKMSTEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRLSEHIMANAEGVDLGVRSGSLISRLRLDPLRDSDFVPLPGQLLRKYITYARSFVFPRMTKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRVEITPQDATDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDCFSVSEIYSLADRIALKVPDIDAFIENLNSVGYLLKKGPKTYQVLSSSYARSQPFKTRG 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0023 832 MobiDBLite consensus disorder prediction 35 58 - -
Aed4g0023 832 Gene3D - 225 275 - -
Aed4g0023 832 Pfam MCM P-loop domain 401 613 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed4g0023 832 Pfam MCM OB domain 198 326 IPR033762 -
Aed4g0023 832 Gene3D - 382 741 IPR027417 -
Aed4g0023 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 737 IPR027417 -
Aed4g0023 832 SMART mcm 194 732 IPR031327 GO:0003677|GO:0005524|GO:0032508
Aed4g0023 832 Gene3D - 198 327 IPR012340 -
Aed4g0023 832 ProSiteProfiles MCM family domain profile. 404 611 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed4g0023 832 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 80 826 IPR031327 GO:0003677|GO:0005524|GO:0032508
Aed4g0023 832 Pfam MCM AAA-lid domain 648 731 IPR041562 -
Aed4g0023 832 PANTHER DNA HELICASE MCM8 80 826 - -
Aed4g0023 832 MobiDBLite consensus disorder prediction 35 50 - -
Aed4g0023 832 PRINTS Mini-chromosome maintenance (MCM) protein family signature 507 521 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed4g0023 832 PRINTS Mini-chromosome maintenance (MCM) protein family signature 585 593 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed4g0023 832 PRINTS Mini-chromosome maintenance (MCM) protein family signature 534 547 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed4g0023 832 PRINTS Mini-chromosome maintenance (MCM) protein family signature 447 462 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed4g0023 832 PRINTS Mini-chromosome maintenance (MCM) protein family signature 558 570 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed4g0023 832 CDD MCM8 408 730 - -
Aed4g0023 832 SUPERFAMILY Nucleic acid-binding proteins 125 328 IPR012340 -
Aed4g0023 832 SMART AAA_5 448 600 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0023 Aed-Chr4 178751 185320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0023 70 818 Core DNA Replication Machinery Family AT3G09660 71.632 0.0 1131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0023 K10737 - gmx:100784549 1353.19