Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0004 ATGGGAGGCGAAGCAAAGAAGTGGAAAAAGAAGAATGCAAATAAATCTGGGGGGTTTGAGTCACTTGGTCTAAATCCGAATGTGTTCAGAGCAATCAAGCGCAAAGGGTACAAAGTGCCCACTCCGATTCAGCGGAAGACCATGCCCTTCATTCTTTCTGGTTCCGATGTCGTTGCCATGGCTCGCACTGGCTCTGGAAAAACGGCGGCGTTTCTTGTCCCCATGCTTCACCGCCTCAACCAACATATCCCTCAGTCTGGTGTCAGAGCCCTCATTTTATCCCCCACCAGGGACTTGGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTCCGTGTTAGTTTGTTAGTTGGCGGAGACAGTATGCAGATTCAGTTTGAGGAGTTGGCTCAGAGTCCTGACATTATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTGGATGACATGTCGTTGCGCAGCGTCGAGTATGTTGTTTTCGACGAGGCCGATTGTTTATTTGGCATGGGTTTCGCCGAGCAGTTGCATCAAATTCTTGCTCAGCTCGGGGAGAACCGTCAGACCTTGCTTTTCAGTGCCACGCTGCCCAGTGCGCTTGCTGAATTTGCCAAGGCTGGTTTGAGAGACCCTCAGCTCGTCAGACTCGACTTGGAAACTAAAATTAGCCCTGACTTGAAGCTTGCCTTCTTCACCTTGAGGCAGGAGGAGAAGTACGCGGCTTTGCTGTATCTGATTAGGGAGCATATTGGTTCTGATCAACAGACATTGATTTTTGTGTCCACCAAACATCACGCTGAGTTTCTCAACGTTCTGTTTCGTCAAGAGGGTATTGAGCCATCTGTGTGTTATGGCGACATGGATCAAGATGCTCGCAAAATCCATGTATCCAGGTTTAGGGCTAGAAAGACAATGTTGTTGATTGTCACAGATGTTGCGGCTCGTGGCATTGACATTCCATTACTTGATAATGTTATTAATTGGGACTTTCCCCCCAAGCCTAAAATATTTGTCCACCGAGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGTACTGCATTTTCTTTTGTGACTCCTGAGGATATGGCCTACGTTTTGGATCTTCATTTGTTTCTTTCAAAACCAATCAAACCTGCTCCCACCGAAGAAGAGGTCTTGCAGGATATGGATGGAGTAATGTCTAGATGTGAACAGGCAATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATTGACCTTGTTTCAGACAGAGTTAGGGATGTTATTGATACTTCTGCGGATCTGGAATTGTTGCAGAGAACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCTGCAAAGGAGTCCATTAGAAGAGTAAAAGATTTGCCTCGTGAAGGACTGCATCCAATGTTCATGAATGTGTTGGAAACTGGGGAGTTAACGGCACTTGCATTTTCTGAACATTTGAAAAAGTTTAGGCCAAAGCAGACCATTTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATCAACAGGGCCCTTCTGGCCAATGGGTGGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCGTGAGCAGCAGCAATCTAAGAGTAATAAGGAAAAGGTATCAGCATGTGGTTCTAAGAGAAAGCCCCAAACATTCAAGGATGAGGACAACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCCGGCCTTTCAGTAAAAGCTAATGAAGACTTTGCATCAAATAGATTGGAAGCAGCTGTCCTCGATCTAGTGGCAGATGATGGTACTGGCATTAAGAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAATAATGGTGACCGTGTTGCTGCAAATGGAAAGATAAAAACAGAGAGTGGTGCAAAAACAAAGGCCACCAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCACATGGTAAGATATCACTTAAAGGGACAAATATTGCTGGTGATGCTCAGGAATCAACAAGTTTGGCAGGATCCTACCAAAGAGGTGGTAGGAATTTTAAAGGCAGCAAGAAGCAACATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAAAAAGGCCAGCAGGATTTCCTATGTAAAGAGCAAGTCGACAAAGGGTAAAAAGTTTGGTAATAATGGTAAAAAAAGAAAAGGCAAATAG 2289 0.4399 MGGEAKKWKKKNANKSGGFESLGLNPNVFRAIKRKGYKVPTPIQRKTMPFILSGSDVVAMARTGSGKTAAFLVPMLHRLNQHIPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMQIQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYAALLYLIREHIGSDQQTLIFVSTKHHAEFLNVLFRQEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTPEDMAYVLDLHLFLSKPIKPAPTEEEVLQDMDGVMSRCEQAMANRETIYGRFPQKVIDLVSDRVRDVIDTSADLELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMNVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWVDVMKRKRAIHENIINLVREQQQSKSNKEKVSACGSKRKPQTFKDEDNYISSIPKNQHMEAGLSVKANEDFASNRLEAAVLDLVADDGTGIKKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHGKISLKGTNIAGDAQESTSLAGSYQRGGRNFKGSKKQHSMPNAHVRSEIKDMDQIRKERQKKASRISYVKSKSTKGKKFGNNGKKRKGK 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0004 762 MobiDBLite consensus disorder prediction 739 762 - -
Aed4g0004 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 245 394 IPR001650 -
Aed4g0004 762 MobiDBLite consensus disorder prediction 687 762 - -
Aed4g0004 762 MobiDBLite consensus disorder prediction 548 567 - -
Aed4g0004 762 Gene3D - 3 224 IPR027417 -
Aed4g0004 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 373 IPR027417 -
Aed4g0004 762 SMART helicmild6 274 355 IPR001650 -
Aed4g0004 762 Pfam DEAD/DEAH box helicase 41 208 IPR011545 GO:0003676|GO:0005524
Aed4g0004 762 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 6 759 - -
Aed4g0004 762 MobiDBLite consensus disorder prediction 550 567 - -
Aed4g0004 762 CDD DEADc_DDX54 17 222 - -
Aed4g0004 762 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 17 45 IPR014014 GO:0003724
Aed4g0004 762 Gene3D - 236 457 IPR027417 -
Aed4g0004 762 SMART ultradead3 36 243 IPR014001 -
Aed4g0004 762 MobiDBLite consensus disorder prediction 714 738 - -
Aed4g0004 762 CDD SF2_C_DEAD 243 364 - -
Aed4g0004 762 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 6 759 - -
Aed4g0004 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 221 IPR014001 -
Aed4g0004 762 Pfam DBP10CT (NUC160) domain 609 670 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Aed4g0004 762 Pfam Helicase conserved C-terminal domain 245 355 IPR001650 -
Aed4g0004 762 SMART DBP10CT_2 609 671 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0004 Aed-Chr4 15749 22680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0004 1 388 Eukaryotic Initiation Factors Gene Family AT1G72730 31.633 9.26e-57 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0004 K14808 - gmx:100806274 1365.52