Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2698 ATGGAGTATGGTGCGTTTGGGAGCTTGTCGGATCAGTACTGTGAAGAAGTAGATTTGATCGAGGAGTTGCTGTTAGAAGGTTGCTGGGTGGAAACGATGGACAAGAGATGGTGGATTGGACCCAAGGCTGCGGCAGCTGGACCATCTTACTCCGTCAAAGACAGATTAGTGGTTGCGGTGGCCTACTTGAGACAATACACAAACCACAACCCCAATGTGCTCATTCAGATATGGGTTCCCGTTCCCCTACGGAGGAGGCCTGAGCATGAGCATGAGCATGAGCCTGAGCCTGATCATGTTGCTTTTCCATTTCCCGTCATCAACATGAACACGATCAACACGAACGTAAACCTTCGGTTCTTTAGATGCCATGAGTACCCGGCGCGGCTTGGTTATGATGATGTCCCAGCCCTTCCTGTCTTCGAAAGAGGCAGTCCCACATGCCTCGGTGTCCTCCAGATTCTAATGCCACCTCGCTGGGACACCATCAACTATCCACAACTTGACAATAATAATAATATTCTCTGCAATGCTTTCCAGGTCTTCTTTAAAACTCCTATTCCTTATAGCACATTTAATAACAAAAAAGTACCTAGAGGTGTTGATGATTTGAGGAGTTGCGAGAGCCAGCTGATTCCACCTGCTGTGAAGTGCGAGTGCATGTGCATGTGCATGCAGATGCAGGTATTTGAGGAAGAGGTGTATGAGGCAGCAGTGAATGAGATGATGGAGGTGGTGACGTGTGTGTGCAAGACGCATAATCTGCCTTTGGGTCTGACATGGGGTCCCAGTGCTCCTGGCAATGTAATATCGACTGTGGACAGAGCTTGTTTTGTTGGAGATGGTCAAGTATTGGGGTTCCAGGAGGCCTGCTCTCAGCATCAGCTGTTCCGCGGACAAGGAATCGTTGGGACAGCCTTCACAACAGCCAAGCCCTGTTTTGCGAACGACATAACCGCCTTCACCAAAGCTGAATATCCTCTCTCTCACCACGCCAACATCTTTGGCTTGCATGCTGCCCTTGCTATTCCTCTAAGGACTACACACTTACACTTTCATTTTCATTTTGTCTTGGAGTTCTTCCTTCCCAAACACTGCCGTGACGACAGGGAACACCAGAACCACCTACTCAACTCATTATCCATTCTCCTTCACCAAGCTTGTCACACCTTCAATATTAATCTCATGGAGGCCGATCCATTTGTTGTTATCACTCATAAATCTGAATCTGAATCTGAATCCCCGTCGTGGATTGCAAATATGATGGAGGCCCAGGCCGGGGGGAAAGCTGTGTGCATGTCTTTGGAGCTGGAGCTGGAAGATCCCAAAACCAAAGAGGAGTTCAACTGGGAGCAGGCACAGGCAGAGGAGGAGCAAGTAGTAATGTTTAATTCAGATTCTCAAACTCCCACATTTGGTGGTGGGCGGCGCGGCAGAAAATCAGGCGAGAAGAGACGAACCAAGGCGGAGAAGACTATCAGTTTGCCAGTTCTAAGACAGTACTTTGCAGGAAGCCTAAAAGATGCGGCAAAGAGCATTGGAGTGTGTCCCACAACTCTGAAAAGGATATGCAGACAGCATGGCATAACGAGGTGGCCTTCAAGGAAAATAAAGAAGGTAGGCCACTCTTTACAGAAACTTCAACTTGTCATCGATTCAGTACAGGGTGCCGAGGGTGCCATACAGATCGGCTCCTTCTATAACAGTTTTCCCGAGCTTAGCTCTGCCACATCAGCATCAGCAGCAGAAAGCCCTGTTCAACATTTTACCACACCCACACCCACACCCAACTTGAATTTGAGGGTTAAGGCTACTTTTGCCGATGAAAAAATCTGTTTCAGCCTACAACCACTTTTGGGTTTCACAGAACTTCAGCTGGAAATTGCAAGGCGTTTCAATCTAAACGATGTGAGCAACGTGGTTCTAAAGTATTTGGATGATGACGGAGAGTGGGTTGTTTTAGCTTGCGATGCTGATCTCGATGAGTGTAAGGACTTGCATACAACGTCTCAGACCCGCACAATTAGACTCGCCCTATTTCATGCTTCGCCTCTTAATCTACCAAACCCTTCTTCTTAA 2079 0.4781 MEYGAFGSLSDQYCEEVDLIEELLLEGCWVETMDKRWWIGPKAAAAGPSYSVKDRLVVAVAYLRQYTNHNPNVLIQIWVPVPLRRRPEHEHEHEPEPDHVAFPFPVINMNTINTNVNLRFFRCHEYPARLGYDDVPALPVFERGSPTCLGVLQILMPPRWDTINYPQLDNNNNILCNAFQVFFKTPIPYSTFNNKKVPRGVDDLRSCESQLIPPAVKCECMCMCMQMQVFEEEVYEAAVNEMMEVVTCVCKTHNLPLGLTWGPSAPGNVISTVDRACFVGDGQVLGFQEACSQHQLFRGQGIVGTAFTTAKPCFANDITAFTKAEYPLSHHANIFGLHAALAIPLRTTHLHFHFHFVLEFFLPKHCRDDREHQNHLLNSLSILLHQACHTFNINLMEADPFVVITHKSESESESPSWIANMMEAQAGGKAVCMSLELELEDPKTKEEFNWEQAQAEEEQVVMFNSDSQTPTFGGGRRGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLQKLQLVIDSVQGAEGAIQIGSFYNSFPELSSATSASAAESPVQHFTTPTPTPNLNLRVKATFADEKICFSLQPLLGFTELQLEIARRFNLNDVSNVVLKYLDDDGEWVVLACDADLDECKDLHTTSQTRTIRLALFHASPLNLPNPSS 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2698 692 Gene3D - 596 684 - -
Aed3g2698 692 PANTHER PROTEIN NLP8 31 685 IPR045012 GO:0003700
Aed3g2698 692 PANTHER PROTEIN NLP2 31 685 - -
Aed3g2698 692 SMART PB1_new 599 682 IPR000270 GO:0005515
Aed3g2698 692 Pfam PB1 domain 600 681 IPR000270 GO:0005515
Aed3g2698 692 Pfam RWP-RK domain 493 540 IPR003035 -
Aed3g2698 692 MobiDBLite consensus disorder prediction 466 489 - -
Aed3g2698 692 ProSiteProfiles RWP-RK domain profile. 479 560 IPR003035 -
Aed3g2698 692 SUPERFAMILY CAD & PB1 domains 597 684 - -
Aed3g2698 692 CDD PB1_NLP 600 681 IPR034891 -
Aed3g2698 692 ProSiteProfiles PB1 domain profile. 599 682 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2698 Aed-Chr3 28600075 28602317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2698 8 676 NLP Transcription Factor Family AT1G76350 36.146 6.05e-129 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aed3g2698 PB1 1.3e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2698 - - gmx:100792100 741.88