Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2697 ATGAAGAGGGAGTCTGATAATTACGAAAAAGAGGGAAAGAAGAAGAAACAATGGTCGATGAAGACATCAACATCAACTGAGCCAAGCCCCTGCACGGAGTGTGGGAAGAAGTTCTGGTCTTGGAAGGCACTTTTCGGACACATGCGATGTCACCCGGAACGTAAGTGGAGAGGGATAAATCCACCACCAAATGTGAAAGTGATGAGAAGAAAAGAACAAGAAGAAATGACTGAGGAAGAGCATGAGGTGGCAGCCTGTTTGCTCCTACTTTCCAATGCAAGAGAGGAAGATATTCATTTCGAGTGCTCCAATTGCAATAAGGTATTTGAGTCCCACCAGATCCTGGGGGGGCACCGTGCCTGTCACAAGAATGTCAAGGACTGTTTTGCTAGCAACAATGGAAGTGATCATCAAGAGGACAACATGAACAACATGAGTGGTGGTGGGGGCCACCAATGCAGCATATGCTTGAGGGTGTTCTCCACGGGACAGGCTCTGGGTGGACACAAGAGGTGTCACTGGGACAAAGGAGGAGGAGGGAACATCCACAGCCACAACAATACTCTTCTCCTCCTTGACAACTTGAATTTTCCTCCCTTTCCCCATCCCTCCACTCACTCTCCTCCTCCCCTTCCCCTCACTCTCAATTTGAGGTTGGGTCTCTAA 666 0.4865 MKRESDNYEKEGKKKKQWSMKTSTSTEPSPCTECGKKFWSWKALFGHMRCHPERKWRGINPPPNVKVMRRKEQEEMTEEEHEVAACLLLLSNAREEDIHFECSNCNKVFESHQILGGHRACHKNVKDCFASNNGSDHQEDNMNNMSGGGGHQCSICLRVFSTGQALGGHKRCHWDKGGGGNIHSHNNTLLLLDNLNFPPFPHPSTHSPPPLPLTLNLRLGL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2697 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Aed3g2697 221 MobiDBLite consensus disorder prediction 1 20 - -
Aed3g2697 221 SMART c2h2final6 100 122 IPR013087 -
Aed3g2697 221 SMART c2h2final6 29 51 IPR013087 -
Aed3g2697 221 SMART c2h2final6 151 173 IPR013087 -
Aed3g2697 221 Pfam C2H2-type zinc finger 31 53 - -
Aed3g2697 221 Pfam C2H2-type zinc finger 99 123 - -
Aed3g2697 221 Pfam C2H2-type zinc finger 151 176 - -
Aed3g2697 221 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Aed3g2697 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 173 IPR013087 -
Aed3g2697 221 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Aed3g2697 221 Gene3D Classic Zinc Finger 5 86 - -
Aed3g2697 221 MobiDBLite consensus disorder prediction 1 31 - -
Aed3g2697 221 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Aed3g2697 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Aed3g2697 221 Gene3D Classic Zinc Finger 97 173 - -
Aed3g2697 221 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 13 221 - -
Aed3g2697 221 SUPERFAMILY beta-beta-alpha zinc fingers 15 54 IPR036236 -
Aed3g2697 221 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 13 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2697 Aed-Chr3 28578165 28578830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2697 30 176 C2H2 Transcription Factor Family AT4G35280 56.069 1.58e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed3g2697 zf-C2H2_6 1.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2697 - - gmx:100792631 249.21