Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2689 ATGGAAATGAGAGGTAACAGTGCTGGAGATGCTGAGCTTCAACTTGATGCCGATTTTGTGCCGGATCCTGCTCAGACATATACTGGAAATGAAATTGAAAAGGGTGAGAACGCCCATCGGATTCCTCAGTCTAGAAGACCTAATCTATCCTCACTGCAAATACCAGCATGGTCACTAGATATTGCATTATCTACTTTTGCAAAGACTGATGGTCCTTCTTCGGTGGTTTCTCGATCAAGTCCTGGTTCTGTTACCACAAGAGGACTTCCCCCAAGACCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAGGTTTACTTCCTCAGAGGAGCTTCAAGATAAATACCTGTTCTCATGATATTGAAAGGACAGGTCTCATTCCCCCATCAGATGCTCCTTCCACCTCAACTCATTTCTCTCTTAATAATAATAAGGTCATCTCCCCATCAACTAAAGTTTCACATTCATTACCAGTTACTCCATTTGCAACTTCAGCTGCAGAGGATGGACACGCAAAACATCCAGGCCGTCATTCTGCTTTTAATACAATGGAATTTCATCAGCATATGATGCGATCATTGTCAGTCCCAGTTAATGGCAAAGTCACTAATTTAAGGGTTACAGATTCTAGGGGCTTGATTCGTGTCATTTCAGCAAAACCACATCTTGAAACTGTTGGTGGAAAGTCAACTGATGCTGCTTTGGTTCCAGAGATTGCCATTGAAGATGCTACTGAGGATATTCCAGAGGAACAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAAGAGTGTGCAGTAAAGTGGTTTAGTATTAAGGGAAACAGGACCTGTGATGTCTGCAATCAGGATGTCCAAAACCTCCCAGTAATGCTGTTGAAAATTTATAATCCTCAAACTACTCCTAGGCAGGCATCAAATGTGCCACTGGAGTCAGAAATAGTTTATTACGGGTATTTCATGCATGGCAGGATCTGGCAGGATGTACCAGCACTTATCTTGGTCAGCATGCTTGCGTACTTTTGTTTTCTAGAGCAACTACTGGTTTCAGATTTGGGACCTCGTGCTCTTGCCATTTCATTACCTTTCTCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCATCGACCATGGTGAGCAGGAGTTTCGTATGGGCTTATGCTTGCTTCCAGTTTGCAATTCTTATCCTGTTAGCTCATCTCAATTTTAATGCAATTCTCTCCATTCTCCTTTCCTCGTTCACTGGATTTGGGATTGCAATCAGTATGAATTCTCTCGTTATGGAATTCATTGGATGGAGAACTAGTAGGCGGATTGAGAATGTTAACAGGACAGAGCATGAGCATGAACATGTACACGAAGATCGACGACAAGAGCATCATCATGCCACTCAATTATGA 1461 0.4264 MEMRGNSAGDAELQLDADFVPDPAQTYTGNEIEKGENAHRIPQSRRPNLSSLQIPAWSLDIALSTFAKTDGPSSVVSRSSPGSVTTRGLPPRPNSAKVRSSMRGLLPQRSFKINTCSHDIERTGLIPPSDAPSTSTHFSLNNNKVISPSTKVSHSLPVTPFATSAAEDGHAKHPGRHSAFNTMEFHQHMMRSLSVPVNGKVTNLRVTDSRGLIRVISAKPHLETVGGKSTDAALVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCNQDVQNLPVMLLKIYNPQTTPRQASNVPLESEIVYYGYFMHGRIWQDVPALILVSMLAYFCFLEQLLVSDLGPRALAISLPFSCVLGLLSSMIASTMVSRSFVWAYACFQFAILILLAHLNFNAILSILLSSFTGFGIAISMNSLVMEFIGWRTSRRIENVNRTEHEHEHVHEDRRQEHHHATQL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2689 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 309 IPR013083 -
Aed3g2689 486 PANTHER OS02G0165000 PROTEIN 28 475 - -
Aed3g2689 486 CDD RING_CH-C4HC3_MARCH 254 302 - -
Aed3g2689 486 SUPERFAMILY RING/U-box 250 305 - -
Aed3g2689 486 MobiDBLite consensus disorder prediction 1 47 - -
Aed3g2689 486 PANTHER OS02G0165000 PROTEIN 28 475 - -
Aed3g2689 486 SMART ringv_2 253 302 IPR011016 GO:0008270
Aed3g2689 486 MobiDBLite consensus disorder prediction 69 101 - -
Aed3g2689 486 MobiDBLite consensus disorder prediction 69 90 - -
Aed3g2689 486 Pfam RING-variant domain 254 301 IPR011016 GO:0008270
Aed3g2689 486 MobiDBLite consensus disorder prediction 466 486 - -
Aed3g2689 486 ProSiteProfiles Zinc finger RING-CH-type profile. 246 308 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2689 Aed-Chr3 28511137 28515346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2689 237 308 C3H Transcription Factor Family AT2G37950 45.205 3.67e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2689 - - gmx:100789461 754.977