Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2678 ATGGCGCAGCTTCCTTGCGACTCAGATGGCGTCTGCATGCTCTGCAAGCAGAAACCTACTCCTTCCGAAACTCTCTCTTGCCGAACCTGTGCCACTCCCTGGCACCTTTCATGTCTCCCTACGCCCCCTCTCTCTCACTCCGATGACTCCCATTGGGACTGTCCCGACTGTTCTGAATGTAACATCTCCAACAATGATCTGGTTGCCCCCACCGGAGACCTTGTCTCTGCTATCCATGCCATTCAGGCTGACTCGACTCTCACTGACCAACAAAAAGCACTAAAACGCCAACAACTCCTTGCTGGTTCCTCTGACCCCTCGAGTGACAAAACCAAAGATAAAGATATTTTTGACGGAAGCTTAAATTGTTCTATATGCATGCAGCTACCCGAGAGACCCGTTACGACTCCTTGTGGGCACAATTTCTGCCTGAGGTGTTTTGAGAAATGGATCGGACAAGGGAAGCGTACTTGTGCGAATTGCCGTGCTCAGATTCCAGCCAAGACGGCGAGTCAGCCGAGAATCAACTCTCAGTTGGCCATGGCCATTCGATTGGCGAAGATGGCCAAGTCAGGAGAAGGTTCTTCCGGGCCACCCAAGGTCTGTCACTTTGTCCGCAACCAGGATCGTCCTGACACTGCCTTCACCACTGAACGAGCCAAGAAGACTGGAAAGGCCAACGCTTGCAGTGGGAAGATCTTTGTGACCATTCCTCCAGATCATTTTGGGCCCATTCCAGGTGAAAATGACCCGAGCAGAAATCGTGGTGTTCTGGTTGGTGACACGTGGGAGGACAGGATGGAGTGTCGTCAGTGGGGTGCTCATTTTCCTCATGTTGCGGGCATTGCTGGACAGAGCGGTCATGGTGCCCAGTCTGTTGCCCTTTCTGGTGGGTACGAGGATGACGAGGATCACGGCGAGTGGTTCCTTTACACTGGCAGTGGTGGGAGAGATCTAAGTGGTAACAAACGCACTAATAAACTACAATCCTTTGACCAAAAGTTTGAAAACATGAACGAGGCCTTGAGAGTAAGCTGCCGGAAGGGTTATCCTGTTCGGGTTGTAAGGTCGCACAAGGAAAAGCGTTCTTCTTATGCACCAGAATCTGGAGTGCGTTATGATGGGGTCTATAGAATTGAGAAATGCTGGCGCAAAAATGGAATACAAGGTTGCAAAGTTTGCAGGTATTTGTTTGTGAGATGTGACAATGAGCCAGCACCGTGGGCAAGTGATGAAATTGGAGATTGCCCACGCCCACTGCCTAAAATTAATGAGCTGAAGGGTGCAACTGATATAACTGAAAGGAAGGGTGATCCATCGTGGGATTATGATGAGGAAAAGGGTTGCTGGTTGTGGAAGAAGCCTCCTCCAGAAAGCAAGAAATCATTGGAAATTAAATCTGAAGATGGAACAGCAGTCAGATTTAAAAGAAAAGCAAAAAATGTGTCCGTCAAAGAAAGGCTATTGAAAGAGTTTGGTTGCCAAATATGTCACAAGGTGATGGCATTCCCTCTTACTACACCTTGTGCTCACAATTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTTCAGGCCAAAGTTTCATGAGAAATAGGACAAGTGGAGGTGGACGCACTTTACGAGCACAGAAGACTGTTATGAAATGCCCATCGTGTTCAAATGACATTGCTGACTTTCTTCAGAATCCACAGGTTAATAGAGAGATGCTGGCTGTTATAGAATCATTACAGCATGAGGCTGAAGATGAAAATTCTGTAGAGTCAAGTGATGAAAATCTGCATGATGCTATAGAGGTTTCAAAACCTTGCGGTTCTAGTGATAAGGTCCTGGAAGAAATTAAGGAGAATGATCTGAATCAGCCACACAAGCGAAGGAAAGAGTGA 1881 0.4774 MAQLPCDSDGVCMLCKQKPTPSETLSCRTCATPWHLSCLPTPPLSHSDDSHWDCPDCSECNISNNDLVAPTGDLVSAIHAIQADSTLTDQQKALKRQQLLAGSSDPSSDKTKDKDIFDGSLNCSICMQLPERPVTTPCGHNFCLRCFEKWIGQGKRTCANCRAQIPAKTASQPRINSQLAMAIRLAKMAKSGEGSSGPPKVCHFVRNQDRPDTAFTTERAKKTGKANACSGKIFVTIPPDHFGPIPGENDPSRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSGHGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRVSCRKGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKNGIQGCKVCRYLFVRCDNEPAPWASDEIGDCPRPLPKINELKGATDITERKGDPSWDYDEEKGCWLWKKPPPESKKSLEIKSEDGTAVRFKRKAKNVSVKERLLKEFGCQICHKVMAFPLTTPCAHNFCKACLEGAFSGQSFMRNRTSGGGRTLRAQKTVMKCPSCSNDIADFLQNPQVNREMLAVIESLQHEAEDENSVESSDENLHDAIEVSKPCGSSDKVLEEIKENDLNQPHKRRKE 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2678 626 MobiDBLite consensus disorder prediction 578 596 - -
Aed3g2678 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 190 IPR013083 -
Aed3g2678 626 SMART ring_2 123 161 IPR001841 -
Aed3g2678 626 SMART ring_2 494 551 IPR001841 -
Aed3g2678 626 SMART ring_2 12 57 IPR001841 -
Aed3g2678 626 SMART PHD_3 11 58 IPR001965 -
Aed3g2678 626 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 619 IPR045134 -
Aed3g2678 626 CDD RING-HC 123 161 - -
Aed3g2678 626 ProSitePatterns Zinc finger PHD-type signature. 12 57 IPR019786 -
Aed3g2678 626 ProSiteProfiles Zinc finger RING-type profile. 494 552 IPR001841 -
Aed3g2678 626 SUPERFAMILY RING/U-box 115 169 - -
Aed3g2678 626 Pfam RING-type zinc-finger 494 540 IPR027370 -
Aed3g2678 626 SMART G9a_1 247 404 IPR003105 -
Aed3g2678 626 SUPERFAMILY PUA domain-like 226 419 IPR015947 -
Aed3g2678 626 MobiDBLite consensus disorder prediction 604 626 - -
Aed3g2678 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Aed3g2678 626 ProSitePatterns Zinc finger RING-type signature. 509 518 IPR017907 -
Aed3g2678 626 SUPERFAMILY RING/U-box 486 576 - -
Aed3g2678 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 601 IPR013083 -
Aed3g2678 626 ProSiteProfiles Zinc finger RING-type profile. 123 162 IPR001841 -
Aed3g2678 626 Pfam Zinc finger, C3HC4 type (RING finger) 121 166 - -
Aed3g2678 626 Pfam SAD/SRA domain 255 403 IPR003105 -
Aed3g2678 626 ProSiteProfiles Zinc finger PHD-type profile. 9 60 IPR019787 -
Aed3g2678 626 Gene3D - 223 416 IPR036987 -
Aed3g2678 626 MobiDBLite consensus disorder prediction 578 626 - -
Aed3g2678 626 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 619 - -
Aed3g2678 626 ProSiteProfiles YDG domain profile. 252 400 IPR003105 -
Aed3g2678 626 SUPERFAMILY FYVE/PHD zinc finger 4 60 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2678 Aed-Chr3 28459111 28465231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2678 3 584 C2H2 Transcription Factor Family AT5G39550 61.993 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2678 K10638 - gmx:100786796 1150.96