Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2656 ATGCAATCAGATAATGGCAAGTTATTTATTGGTGGAATATCATGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGGGGATTTGGTTTTGTTGTTTTTTCGGACCCAGCTGTTGCAGAAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCCAGGGATGATCAGAACATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCTGGTCCAGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTAACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTTATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTATGATTCTGAAGAGGCAGTTGACAAGGTCTTACTCAAGACATTTCATGAATTAAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCAAGCCGCACCCCACTTGGTGGATATAACTATGGTCTAACTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATACTCCAAGTACCATTGGAGGCTATGGACTTCGAGCAGATGGTAGATTCAGTCCTGTTGCCAGTGGTCGAAGTGGATTTGCTCCATTTGGATCAGGTTATGGAATGAGCATGAGTTTTGAGCCTGGTTTGAATGCTGGATTTGGGGGGAATGCTAATTTCAATAGCAATCTTAGCTATGATCGGGGAGGAAATCCTTATTTTATTGGCAGCTCCAATAGGTTTGGCAGTCCTGTTGGATATGAAAGTGGAAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAACTTGTGGGGTAATGGTGGCCTTAGTTATGGAACAAGTTCTGCAAATTCCAATGCATACGTTGGATCAGGGAGTGGGAGTGTTGGAGGGAACACATTTGGCAACACTGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGGCAGCAGGGAGGAGGGAACAATATGTCACAAAGTAGTGGCAACCTGGGATATGGAGGTGGTGACAACCACAATTATGGTTTGGGGACTGGAGGGTATGGAAGAAGCACTGGTGCCACATTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCAGACTTTTACAACAATAGTTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGAGAGATGGATCTGGTCCCTTTGGTTATGGACTTGGTGGCGCAGCTTCAGATGTTTCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTACACTGTTAATAAGAGGCAGCCAAATAGGGTTAGTTACCTTGTATCCAACACTGATAAACTTATTACAAACTCTGTCGACCTTGGGGTCTTCACGTAG 1497 0.4409 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLTRVNSFLNGFTQGYTPSTIGGYGLRADGRFSPVASGRSGFAPFGSGYGMSMSFEPGLNAGFGGNANFNSNLSYDRGGNPYFIGSSNRFGSPVGYESGNGGNNSFFSSVTRNLWGNGGLSYGTSSANSNAYVGSGSGSVGGNTFGNTGVNWGSSAISGQQGGGNNMSQSSGNLGYGGGDNHNYGLGTGGYGRSTGATFAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRVSYLVSNTDKLITNSVDLGVFT 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2656 498 Gene3D - 103 189 IPR012677 -
Aed3g2656 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Aed3g2656 498 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 476 - -
Aed3g2656 498 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Aed3g2656 498 SMART rrm1_1 7 78 IPR000504 GO:0003723
Aed3g2656 498 SMART rrm1_1 107 179 IPR000504 GO:0003723
Aed3g2656 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Aed3g2656 498 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Aed3g2656 498 SUPERFAMILY RNA-binding domain, RBD 104 201 IPR035979 GO:0003676
Aed3g2656 498 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Aed3g2656 498 Gene3D - 4 88 IPR012677 -
Aed3g2656 498 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 476 - -
Aed3g2656 498 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Aed3g2656 498 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2656 Aed-Chr3 28344455 28350833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2656 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 32.620 7.10e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2656 K14411 - gmx:100795907 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2656 3 28344455 28350833 Aed3g2656 3 28344455 28350833 ECH
Aed9g1379 9 14245507 14251084 Aed3g2656 3 28344455 28350833 PCT