LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed3g2652	ATGGTTTCTTCAGACAAAAGTGCGGATCAAAATACCCCTTCTGATAAATTGCAGCAGAGAGTGAGTCCTGATAGTGATACTACATTGTCACAAGGTCATGATACTAAAGATGATCTGTCCAAACCAGAGGAAGCAACAAGTATTCCTTCTATTGTAGCTAAAAACGAAGAAGGGAAGGATTCTGATGCTACTGCTTGTGCCTTGGAATCAGATCAAGAAGGAAGCACATGCTCTTTACCGCTTGAGAAACCTTTGCAGAGCCCTGATACTCTTTCGCATGAGCTGCCTCGATTGCAGTCCAGTCAGGAAAGTCCCTCTATAATACGTGAAAAGGTATCAAAAGATGGCTATAACTGGCGAAAATATGGTCAGAAACATGTTAAGGGAAATGAATTTATAAGGAGCTATTACAAGTGTACACATCCAAACTGCCAGGCAAAAAAGCAACTGCAGCAGTCAAATAATGGGCATATCACAGATTCCATCTGTATTGGTCAGCATAATCATCCTAGACCTCAATTGAACTCCACAGTATCAGTTGAGTGTGTTCTGCCTGTTGAACAAGCACCACACAAACCCTCTTTAGCTAATGTGGAAGACAAAACATCCGTTGAGCATGGATGTATGCCTCAACAGATCAAGCCTTTACGTTCCCTTCCGACTGCAAAAGTTTCCCCAGTTATTGAGTTGAAAGCTGCACATTTACAATTGACTAAGGCGAAGAATCAGGTTCATGACAATGAGGAACCTGCGTTAAAGCGGCTGAAGAAAGACTGTAGTAATGCTGATGTCACTAGAGTTGACATGTCAACTCGTGAATCTCGTGTTGTTGTTCAGACTTCAAGTGAGGTTGATCTGGTAAATGATGGGTATCGCTGGCGCAAATATGGGCAGAAGCTAGTTAAAGGGAATACAAACCCAAGAAGTTATTATCGATGCTCGAATCCTGGATGCCCTGTCAAAAAGCATGTAGAAAGGGCCTCTCATGATTCAAAAATTGTAATCACTACCTATGAGGGACAGCATGACCATGAAATCCCCCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATACTCTCACAACGGCCAATAATGGCAAGGCAGGAACCAAATCTGAAGGTAATACTGATGATACAGGGGAACAAAGCGGCTTGGGCTCAGTAAGCAGACTAACAGAGCAACTAAATGATGAGTCAATTGCCAAGTCAAAGGCTGGTGATATGACAGGTCCTGAATTTAAATTAACTGAGGAACAACAACAAAAAGATAACCCAGCTACTAAAGACGATTCTGTCAGCAACGACGCCATATGCCATTCAAGTTCTGGTGTTATGTGTAGATCAAATGAACAGCTGAAAGGTGAGGTAAAACCTATATCAGAAGGAAGTAAGGATTGCCTTAATGTGATTGCCGTTCATGATACTCCTAGTACAGCAAGTGAATTTAATAAGCAATCAGCAGCTGATGCAGAACCGGTCCAAAGCTAA	1491	0.4219	MVSSDKSADQNTPSDKLQQRVSPDSDTTLSQGHDTKDDLSKPEEATSIPSIVAKNEEGKDSDATACALESDQEGSTCSLPLEKPLQSPDTLSHELPRLQSSQESPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCQAKKQLQQSNNGHITDSICIGQHNHPRPQLNSTVSVECVLPVEQAPHKPSLANVEDKTSVEHGCMPQQIKPLRSLPTAKVSPVIELKAAHLQLTKAKNQVHDNEEPALKRLKKDCSNADVTRVDMSTRESRVVVQTSSEVDLVNDGYRWRKYGQKLVKGNTNPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHEIPPGRTVTHNAATNTLTTANNGKAGTKSEGNTDDTGEQSGLGSVSRLTEQLNDESIAKSKAGDMTGPEFKLTEEQQQKDNPATKDDSVSNDAICHSSSGVMCRSNEQLKGEVKPISEGSKDCLNVIAVHDTPSTASEFNKQSAADAEPVQS	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed3g2652	496	PANTHER	WRKY TRANSCRIPTION FACTOR 1	1	444	-	-
	Aed3g2652	496	SUPERFAMILY	WRKY DNA-binding domain	109	172	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2652	496	MobiDBLite	consensus disorder prediction	360	400	-	-
	Aed3g2652	496	ProSiteProfiles	WRKY domain profile.	108	172	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2652	496	MobiDBLite	consensus disorder prediction	360	437	-	-
	Aed3g2652	496	Gene3D	WRKY domain	274	340	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2652	496	SMART	WRKY_cls	287	346	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2652	496	SMART	WRKY_cls	113	171	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2652	496	MobiDBLite	consensus disorder prediction	1	109	-	-
	Aed3g2652	496	Gene3D	WRKY domain	101	173	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2652	496	MobiDBLite	consensus disorder prediction	477	496	-	-
	Aed3g2652	496	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	1	444	IPR044810	GO:0003700
	Aed3g2652	496	MobiDBLite	consensus disorder prediction	92	107	-	-
	Aed3g2652	496	MobiDBLite	consensus disorder prediction	68	85	-	-
	Aed3g2652	496	SUPERFAMILY	WRKY DNA-binding domain	279	347	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2652	496	Pfam	WRKY DNA -binding domain	288	345	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2652	496	Pfam	WRKY DNA -binding domain	114	170	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2652	496	ProSiteProfiles	WRKY domain profile.	282	347	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2652	496	MobiDBLite	consensus disorder prediction	1	29	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed3g2652	Aed-Chr3	28327988	28334546	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed3g2652	25	391	WRKY Transcription Factor Family	AT2G04880	42.377	1.63e-85	269

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Aed3g2652		WRKY	2.6e-25	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed3g2652	3	28327988	28334546	Aed3g2652	3	28327988	28334546	ECH