Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2649 ATGTCTGTGAATCGAAGGCTTCCTGCTTCAAATGGTAGATTGCCATCTAATATGAAGTCCTGGAAGCTGAATGAGCCTCTGCATGGGTCTAATTCTCCTAGGACATGCAGGAGGAAGCCCTCGCTGCTTTGGTTTTTTGGCTTTGTTGCCATAGGGAGTGTTTGGTTCATCTTGAGTTTCAATAGTAAGCATTTGGTGAGCAAGGAGAATGAAGCAATTTGTGAAGCGAGAGAAAGAATCTTGCTACAACGTTACAATGTTAGTAGGAAACAGATTCATGCTTTAGCTTCCTTGTTCTCTGGATCAGATCAGATTTTATCCAACTGTATTGATGAAAGGAGACTTCAAATGCTGTTAAGCAGTGGCATCGTCAGCACTCCACAGTTAATGTGTCCGGAGAATCAGGAGTTACAAAAGGAGCATATTTGTGTTGCAGACACTGTAGAGCCTATAGAACAATGCCCAATTCTCGATGATTATGTCCAGACAAGGCTTGAATTATCATTCCCATTGAAGAATTATGTATCATTGGCCTCTGCACTTTTGACTGATTTGGTTAGTTATTTGCATTGTGGAAAGAACATTGTGCAATCATGGGAACTGAGGGTATCTTCAATTTGGGATCGTGTGAGTTCATCTAATTTAATTAAAGGGTGCTGGTGGGTCCTCATTGGAATTATAATGTCCTACTTCTGTTTACTATGGTGGAGTCAAAAGCAGAAGCTAGTTCAGGGGAATCCAGCTGCACAACAAAAACGGTCGAAACAATTTCCAAGGGGTCCTTCAAGGGGTGCTGGGAGATGGAGGAAAAAGTTACTAGTTATATTTGTGTCACTTGGAATAATTGGGTCCTTTTGGTTATTTTGGCACCTGAATACGGGCATTATGCAGAGAAGAGAAGAAACACTAGCAAATATGTGTGATGAGAGAGCCCGTATGCTGCAAGATCAGTTTAATGTGAGCATGAACCATGTTCATGCTCTGGCTATCCTTGTATCTACCTTTCACCATGGTAAACATCCTTCTGCAATTGATCAGAAAATTTTTGGAGAATATACAGAGAGTACAGCATTTGAAAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTCCACTCTGATAGGATGCATTTTGAGAAACAGCATGGGTGGACAATTAAGAAAATGGAAACTGAGAGTGAGGCATTAGTCCAAGATTGTATTCCAGAAAAATTGGATCCAGCACCCATTCAAGATGAATATGCCCCGGTGATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCGTGAGAATATTTTGCGAGCAAGGGCATCTGGAAAGGGGGTTCTGACATCCCCTTTTAAACTACTAAAGTCAAATCACCTGGGTGTTGTACTAACGTTTGCTGTCTATAACACTAATCTTCCTTTAGATGCCACACCAGAGCAGCGTATCGAAGCTACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTGCTAGTAAACAAACCATTGTTGTAAATGTTTATGACACAACTAATGCATCTGCACCAATCACAATGTATGGTACTGATGTTGCTGACACTGGCCTACTACACATAAGCAGCCTAGATTTTGGGGATCCGCTACGAAAACATGAGATGCACTGCAGGTTCAAGCAGAGGCCTCCATTACCTTGGACAGCAATCAATGCATCAGTGGGGGTGTTTGTTATTACTTTGCTTCTTGGTCATATTTTTTACGCAGCAATAAATAAAATAGCAAAAGTTGAGCATGACTATCGTCAAATGAGAGAGCTGAAAGGTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCGACAGTTTCACACGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGATACTGAGCTTGATGAAAACCAGATGGACTGTGCCCAAACCGCCCACAAAAGTGGTAAAGATCTTATCTCAGTCATAAGCGAGGTTCTCGATCAGGCTAAGATTGAGGCAGGAAAGCTTGAACTTGAAGCAGTGGCCTTTGATACACGAGCTATTCTGGATGAAGTTTTATCACTTTTCTCTGAAAAATCTAATGAAAAAGGAATAGAGCTGGCTGTTTATGCATCACATCAAGTACCCAAAGTTGTCATTGGTGATCCTAAACGGTTTCGGCAAATAATTACTAATCTTGTTGGCAACTCACTTAAGTTCACTCATGATAAAGGACATGTATTTGTCTCTGTTCATCTGGCAAATGAAGTGAAGAACCCACTTCATATTATGGACGCAGTGCTGAGAGAAGGCTTAAACTTGAACCAGGACATATCAAACAGAACATATGATACGTTAAGTGGGTTTCCTGTATGCAATAGATGGAAAAGTTGGAAAAAATTTAATAAGTTAAGTGGCAGAAATGAGCCTGAAACTATTCAACTTCTAGTAATAGTTGAGGACACAGGTATAGGAATTCCTACAGATGCACAAAGCCGCATATTCACACCTTTTATGCAGGCTGACAGTTCCACCTCCCGAACATATGGTGGTACTGGAATAGGACTGAGCATTAGTAAATGTCTTGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAACCTGGAATTGGAAGTACTTTTTCCTTTACTGGAACTTTCAGAAAAGGAGAAAGCATGTCTCTGGATGCAATGCGGCAGAATAATCATTTTGGTCCAGAGTTCCAAGGATTGAGAGCATTAGTAGTAGATAGAAGAAAAATCCGAGCTGAGGTCACAAGATATCATCTGCAGAGATTGGGAATGTCCGTGGATGTAACTTACAGTCTGAATTCTGCATGCTCTTGTCTATCTAATACATGTAACATGAGTATGTCCACCCAGTTGACCATGATTCTTATAGACAAGGATGCTTGGGATAAAGAATGTCACATCTTATACACGATCATGAAACACAGACAGAATGCCATCAAAGGGGATCCAATGAACTTACCAAAGATTTTTGTCCTGGCCACCCACCTTAGCTCCAATGAACAGGAAGAGCTCAAGTCAGTTGGTATCATAGATGATATACTAATGAAGCCTCTTTGGCTTAGTTCTTTGATTCAGTGTTACAGAGAATCCCTTGGTACTGAAACAAAGCGAATAAATAGGAAAAAAGTATCCAAACTCGGGAATTTATTAATGCACAAACAAATTTTGGTGGTTGATGATAATGCAGTGAACAGAAGAGTTGCAAAAGGTGTTCTACAGAAATATGGGGCAAAGGTTACTGCTGTGGAGAGTGGAAGGGCAGCTCTAAAGATGCTTAAACTGCCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCACAAATGGATGGTTTTGAAGCGACGAGGCAAATCCGTTGTTTGGAGAGTGAGGTAAATGAGAAAATTGTGTGTGGGCAAGCATCTGCAGAGATGTTTGGTAACATCTCTTATTGGCACATTCCAATACTAGCAATGACAGCGGATTCAACTCAGTCTTCCAATGAAGAGTGCATAAAGTGTGGAATGGATGACTACGTGTCAAAGCCATTTGAAGAAGAGCAGCTCTACATGGCAATGGCACATATTGTAATGGTTGGACATGCCCCAGCTGATGGTGCTGATTTCGAGTTCAAGATAGTCACTTGCAGGACAGGAGGAGGTCAACAGAAGGAGGCATAA 3747 0.4123 MSVNRRLPASNGRLPSNMKSWKLNEPLHGSNSPRTCRRKPSLLWFFGFVAIGSVWFILSFNSKHLVSKENEAICEARERILLQRYNVSRKQIHALASLFSGSDQILSNCIDERRLQMLLSSGIVSTPQLMCPENQELQKEHICVADTVEPIEQCPILDDYVQTRLELSFPLKNYVSLASALLTDLVSYLHCGKNIVQSWELRVSSIWDRVSSSNLIKGCWWVLIGIIMSYFCLLWWSQKQKLVQGNPAAQQKRSKQFPRGPSRGAGRWRKKLLVIFVSLGIIGSFWLFWHLNTGIMQRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETESEALVQDCIPEKLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVADTGLLHISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVFVITLLLGHIFYAAINKIAKVEHDYRQMRELKGRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDCAQTAHKSGKDLISVISEVLDQAKIEAGKLELEAVAFDTRAILDEVLSLFSEKSNEKGIELAVYASHQVPKVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSVHLANEVKNPLHIMDAVLREGLNLNQDISNRTYDTLSGFPVCNRWKSWKKFNKLSGRNEPETIQLLVIVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGESMSLDAMRQNNHFGPEFQGLRALVVDRRKIRAEVTRYHLQRLGMSVDVTYSLNSACSCLSNTCNMSMSTQLTMILIDKDAWDKECHILYTIMKHRQNAIKGDPMNLPKIFVLATHLSSNEQEELKSVGIIDDILMKPLWLSSLIQCYRESLGTETKRINRKKVSKLGNLLMHKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLKLPHNFDACFMDLQMPQMDGFEATRQIRCLESEVNEKIVCGQASAEMFGNISYWHIPILAMTADSTQSSNEECIKCGMDDYVSKPFEEEQLYMAMAHIVMVGHAPADGADFEFKIVTCRTGGGQQKEA 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2649 1248 CDD HisKA 625 686 IPR003661 GO:0000155|GO:0007165
Aed3g2649 1248 Pfam His Kinase A (phospho-acceptor) domain 625 690 IPR003661 GO:0000155|GO:0007165
Aed3g2649 1248 Gene3D - 689 907 IPR036890 -
Aed3g2649 1248 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 610 691 IPR036097 GO:0000155|GO:0007165
Aed3g2649 1248 MobiDBLite consensus disorder prediction 1 33 - -
Aed3g2649 1248 ProSiteProfiles Response regulatory domain profile. 1082 1219 IPR001789 GO:0000160
Aed3g2649 1248 ProSiteProfiles Histidine kinase domain profile. 632 906 IPR005467 -
Aed3g2649 1248 Pfam Response regulator receiver domain 1083 1214 IPR001789 GO:0000160
Aed3g2649 1248 PANTHER HISTIDINE KINASE 2 256 1219 - -
Aed3g2649 1248 SMART CHASE_2 340 539 IPR006189 -
Aed3g2649 1248 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 737 901 IPR003594 -
Aed3g2649 1248 Pfam CHASE domain 343 537 IPR006189 -
Aed3g2649 1248 ProSiteProfiles CHASE domain profile. 340 564 IPR006189 -
Aed3g2649 1248 SMART HisKA_10 625 690 IPR003661 GO:0000155|GO:0007165
Aed3g2649 1248 CDD REC_hyHK_CKI1_RcsC-like 1083 1215 - -
Aed3g2649 1248 ProSiteProfiles Response regulatory domain profile. 929 1059 IPR001789 GO:0000160
Aed3g2649 1248 PRINTS Bacterial sensor protein C-terminal signature 890 903 IPR004358 GO:0016310|GO:0016772
Aed3g2649 1248 PRINTS Bacterial sensor protein C-terminal signature 831 845 IPR004358 GO:0016310|GO:0016772
Aed3g2649 1248 PRINTS Bacterial sensor protein C-terminal signature 849 859 IPR004358 GO:0016310|GO:0016772
Aed3g2649 1248 PRINTS Bacterial sensor protein C-terminal signature 866 884 IPR004358 GO:0016310|GO:0016772
Aed3g2649 1248 SMART REC_2 1081 1215 IPR001789 GO:0000160
Aed3g2649 1248 Gene3D - 923 1064 - -
Aed3g2649 1248 Gene3D - 1077 1221 - -
Aed3g2649 1248 Gene3D - 62 102 - -
Aed3g2649 1248 Gene3D - 291 343 - -
Aed3g2649 1248 PANTHER TWO-COMPONENT HISTIDINE KINASE 256 1219 - -
Aed3g2649 1248 Gene3D - 596 688 - -
Aed3g2649 1248 SMART HKATPase_4 737 906 IPR003594 -
Aed3g2649 1248 SUPERFAMILY CheY-like 924 1059 IPR011006 -
Aed3g2649 1248 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 680 901 IPR036890 -
Aed3g2649 1248 SUPERFAMILY CheY-like 1081 1217 IPR011006 -
Aed3g2649 1248 Gene3D CHASE domain 344 571 IPR042240 -
Aed3g2649 1248 CDD HATPase_EvgS-ArcB-TorS-like 742 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2649 Aed-Chr3 28281162 28291886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2649 45 1216 Miscellaneous Gene Families AT5G35750 58.878 0.0 1348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed3g2649 CHASE 1.2e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2649 K14489 - gmx:100805107 2275.74