Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2643 ATGTCTCTCCAAGCAACCTCGTCCTCAGCTGCTGGTGGTGGTGCCAACATTGAACTTGGTGCTACCTTACTCCTCAGCAGCAACAGCAAGTACACCAGGATATGGCGTAGAAGTTTATTCATAAGATTCCTCATCTCTTCCAAGAAGCCAACAACTTCCACGACACCATCACTACCGTACACTCCAGTGCCTCCTGCTAGAACCTCCTCTTCCAAATCCTCTGTTGCTATTGATATAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAACAAGAGCGCATTAAGAGTGATATTGGTCGAATTGTAAAGGAGAAGAACTTGAAATCTCTCCATGAGCTTGGTGGGGTTGACTCCGTTTACGCTCTCCTTGCTCGTCAACATCAACCCCCAGAGGCAGAGGATCCCACTATTGATGGCAACACCACTATACCAGTACAAGTAGCAGTTCTTGGAACAAACTTGTCCAAGTTTTTATTCAACAGCTCCAAATTCTACCGTTACACAATTTTGATGCTGTTGATCTCCGCTGGGTTGTCATTCGCCACAAAATTCAAGCAGGAGGGACCTAAACATGGTTGGCATGATGGTGTTGCTATAGTTTTTGCTGTTTTACTACTGATTGCTGGAAATTTAGTAGCAAACTTTTGGCGTGTGAGAAAAATGTTGAAATTGGCAAAGAGAAAGGAGGTCAGGGTTAAGAGAGGCGAAGAGATCCTAATGGTTTCCATATCTAATATTGCTGTTGGTAACACAATATGCCTGTGGAAAGGTGATGAGGTTCCAGCAGATGGTTTGCTTGTAAGTGATGACATCCTTGTGCTGTCTGAGCCTGATGAGGCAATAAAAAGCAAACATGATGACCCATTTCTTATATCTGGTTCAAAGGTAATTCGTGGCCAGGGAAGGATGGTGGTAACATCAATTGAAAACAAAATGGGTTTTTTTGAGATAAGTACTTGTAACCCTGAAAGGAGAGGTTTGTTGGAGAGCCTAATTGAGAAGCCAATTTCTTACATTGACATGGCTGCTCTTTTTATCTCTGTACTGGTTGCACTTGTGATATTAATTCGCCTAATTTGTGGAAAAGATGGGAACAATGGGGGGTTGCCAGAAATGAAAGGGAAGGTCTCAATTAGCTTGTTGATGAAGGCCCTTGAGAGAGTTTTTTTGTGGCCACAAGGAGGAAAGGTTTCCATTTTAACAGGTCTTGTTACCGTTGCAATATTCTGCGTGCAGCATGGAATGCCACTTGTGGTTACACTTTCTCTCAAGTACCAGATTCATAAAGGAGTGCCAAACCAAGATGCAATTCTTAATGATTTATCAGCTTGTACGACAATGGGGTTGGTAACTGTCATATGTATTGATGTATCAGGTGAGCTCATATCTAAACCAATGGAGATCAGCAGAATAAGGATGGGGGAGAAAGATATCAGCAATGTTGAGGAATCAGAAACAGATCAACCTGTGCTTGACATGCTTAAACAAGGGGTTGGTCTATCAGTCCTTGCACCAGAGATTTCGCCTTTGTCCAATGCACTTGTTTCTTGGGCAGAAACAACATTGGATATGAACAGGAGATCTTTCACAGAAAAACAATTTGACATTCTTAAGCACATCAAACTGGATTCTGGCAAAGAAGGCAGTGGAATTTTGGCGAGGAAAAAAGTTGGGGACAATGAACAAGTTCTGCTGCACTTGCACTGGATTGGGGATGCATCCACGATATTGGAAATGTGTTCACAATACTATGATAGTATAGGGGATTGCCATGCCATGGAAAATCAGAAAAACAGATTTGAGCAGGTGATTAAAGAGATGGAGGACGCTGGCCTCAAGCCAGTTGCGTTTGCTTATAGACAAACAAATAGAGAAGAACTTGAGCAAGAACAACTGATCTTGTTAGGACTGATGGGTCTCAAATTCACTACTAATTTAGAATCCATGAAATCAGCTTTGGAAAATCTCAGAAATGCTGCAAATATACAGATCAAACTGGTCTCGGAGGATGGCATCAAGGAAGTGAAAGGCATAGCTTCTGAACTAGGACTAGAAAATGATACTGTGCTCGAAGGAAAAAAACTTCAAGATTTGAATGAGGAAGCTAGATTAGACGAAGTGGATCGAGCCCATGTAATGGCAAGCTTCCATCCCGAAGACAAACTTCTGATGATACAGTGCTTGCAACAGAAAGGTAAGGTGGTTGCATTCATTGGAACAAGGTGGATGACTAATCATACTTCAGTTCTAAAGGTAGCTGATGTGGGGATACTTCTTGATTCTGTGAGCAGGATAGTGGATAGAGATAGTTCTGACATAACTATCAAATGTTTCAGTGCATTGGAACAAATTGTGATGGGTGGCAGAAGTCAATACCACAATATTCAGAAGTTCATTCAACTTCAGCTGACATGTACCATATCAGGGTTAGTCATAACCTTGATTACAACATGTACTGGAGATTCCCCCCTTGCAGCATTCCAGTTGATTTGGGTGAATGTTTTGATGTGCATTCTGGGAGGCCTAATGATGGTAATGAAGTTAGCCAGCGAGGAACAGCTTTCCATGCAACAATCTGACCATAGGAACCAACATATTATAACCAAAGAAATCTGGAAACGCATTGTTATTCAGGTCTTCAATCTGCTCAACAGCATGCAGTTGTTGAAAAAGGATGTTTTGATTCAGAGCTTCTATTTCTTGGGGGCTTTAGGTGGTTGTTTTCTTATGCAAGTGTTGGTGATTGAGTATGCTAAAGGCCTTGCAGATTGCATGCACCTGAATGCTGAGAGATGGGGTATCTGTGTCTTCATTGCTGCTCTTGCATGCGTATTTGAATGGACCTTGAACAATTTCCTTCCAGCTATTCTCAATCCCCCCAGCACCAATATTGCTTCAGAACCAATTACTTCACCTTCCTTCTATCTTTCCCCAGCTTTTCCATTTCTGATGCTCCTTTTTCTCCCTGTAGGACTCATTATTAGTCAAATGGGAATGAACATGACAATACGTTAG 3024 0.4177 MSLQATSSSAAGGGANIELGATLLLSSNSKYTRIWRRSLFIRFLISSKKPTTSTTPSLPYTPVPPARTSSSKSSVAIDIEEEEEEEEEEEEEKQERIKSDIGRIVKEKNLKSLHELGGVDSVYALLARQHQPPEAEDPTIDGNTTIPVQVAVLGTNLSKFLFNSSKFYRYTILMLLISAGLSFATKFKQEGPKHGWHDGVAIVFAVLLLIAGNLVANFWRVRKMLKLAKRKEVRVKRGEEILMVSISNIAVGNTICLWKGDEVPADGLLVSDDILVLSEPDEAIKSKHDDPFLISGSKVIRGQGRMVVTSIENKMGFFEISTCNPERRGLLESLIEKPISYIDMAALFISVLVALVILIRLICGKDGNNGGLPEMKGKVSISLLMKALERVFLWPQGGKVSILTGLVTVAIFCVQHGMPLVVTLSLKYQIHKGVPNQDAILNDLSACTTMGLVTVICIDVSGELISKPMEISRIRMGEKDISNVEESETDQPVLDMLKQGVGLSVLAPEISPLSNALVSWAETTLDMNRRSFTEKQFDILKHIKLDSGKEGSGILARKKVGDNEQVLLHLHWIGDASTILEMCSQYYDSIGDCHAMENQKNRFEQVIKEMEDAGLKPVAFAYRQTNREELEQEQLILLGLMGLKFTTNLESMKSALENLRNAANIQIKLVSEDGIKEVKGIASELGLENDTVLEGKKLQDLNEEARLDEVDRAHVMASFHPEDKLLMIQCLQQKGKVVAFIGTRWMTNHTSVLKVADVGILLDSVSRIVDRDSSDITIKCFSALEQIVMGGRSQYHNIQKFIQLQLTCTISGLVITLITTCTGDSPLAAFQLIWVNVLMCILGGLMMVMKLASEEQLSMQQSDHRNQHIITKEIWKRIVIQVFNLLNSMQLLKKDVLIQSFYFLGALGGCFLMQVLVIEYAKGLADCMHLNAERWGICVFIAALACVFEWTLNNFLPAILNPPSTNIASEPITSPSFYLSPAFPFLMLLFLPVGLIISQMGMNMTIR 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2643 1007 Gene3D - 483 644 IPR023299 GO:0000166
Aed3g2643 1007 Coils Coil 593 616 - -
Aed3g2643 1007 MobiDBLite consensus disorder prediction 50 97 - -
Aed3g2643 1007 MobiDBLite consensus disorder prediction 78 93 - -
Aed3g2643 1007 Gene3D - 219 319 - -
Aed3g2643 1007 PANTHER CATION TRANSPORTING ATPASE 76 882 - -
Aed3g2643 1007 SUPERFAMILY HAD-like 456 843 IPR036412 -
Aed3g2643 1007 Gene3D - 776 884 - -
Aed3g2643 1007 Gene3D - 647 775 IPR023214 -
Aed3g2643 1007 SUPERFAMILY Calcium ATPase, transmembrane domain M 165 953 IPR023298 -
Aed3g2643 1007 Coils Coil 72 100 - -
Aed3g2643 1007 Pfam E1-E2 ATPase 230 426 - -
Aed3g2643 1007 Gene3D - 320 470 - -
Aed3g2643 1007 PANTHER CATION TRANSPORTING ATPASE 881 970 - -
Aed3g2643 1007 Pfam Cation transporting ATPase, C-terminus 825 881 IPR006068 -
Aed3g2643 1007 SUPERFAMILY Calcium ATPase, transduction domain A 231 311 IPR008250 -
Aed3g2643 1007 PANTHER CATION-TRANSPORTING ATPASE PLANT 76 882 - -
Aed3g2643 1007 PANTHER CATION-TRANSPORTING ATPASE PLANT 881 970 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2643 Aed-Chr3 28253248 28257489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2643 104 962 Primary Pumps ATPases AT3G63380 31.038 5.44e-112 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2643 K01537 - gmx:102661547 1270.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2643 3 28253248 28257489 Aed3g2643 3 28253248 28257489 ECH