Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2625 ATGCAATCCAAATCTGAAACTGCAAATCAACTGAGGTCTGATCCACATTCCTTAACACCTAACAATGTTTATTCTGAACCCTGGTGGCGAGGTATTCCGTACAATCCTGTCCCTCAAGCAATGTCAGGAGTGAATGCATCTAATTCATCTTCACTTGAACGCCCTAATGGTGATTCAGAATCCAGTGAAGAAGACGATGATGCCACTAAAGAATCCCAACCCACTGCTCCTAATCAATCAGGAAATAATGGACAAGACCACCAAGCGATGCAACATTCTTTGGTGCGTGATGATTGCCTTACACAGGCTCCACAACTGGAACTTGTTGGTCATTCAATTGGATATGGTCCTTTTATAGGAATGCCTCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAGCAATACCAAGGAATTTTGAGACGGAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCCGAAAGCCATATCTTCACGAATCCCGTCATCAGCATGCTATGAGAAGAGCACGAGGTAATGGAGGACGTTTTGCAAAGAAAACTGAAGTTGAGGCTTCAAACCACATGAACAAGGAAAAGGATATGGGTACCGGTCAAGTCCCATTCTCACCCTCTGATTCTGCTGAGACCTGGAATTCTCCTAGTTTGCAACAAGTTGCAAGAGGATCTCAAGTGCATGAAAGATTTGAAGAACACAACTATGCAAATGTTTTGCAGTCATCATCTAGTTTTTGTTTGCACTCAGGTGAAAGGGTGGAGGAAGGGGACTGTTCGGGTCAACAACGTGGAAGCATCTCAGCTGAGCACACCTCACAGAGGCGTCTTGCTATTCTGTAA 876 0.4429 MQSKSETANQLRSDPHSLTPNNVYSEPWWRGIPYNPVPQAMSGVNASNSSSLERPNGDSESSEEDDDATKESQPTAPNQSGNNGQDHQAMQHSLVRDDCLTQAPQLELVGHSIGYGPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASNHMNKEKDMGTGQVPFSPSDSAETWNSPSLQQVARGSQVHERFEEHNYANVLQSSSSFCLHSGERVEEGDCSGQQRGSISAEHTSQRRLAIL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2625 291 MobiDBLite consensus disorder prediction 262 291 - -
Aed3g2625 291 MobiDBLite consensus disorder prediction 40 56 - -
Aed3g2625 291 Gene3D - 133 195 - -
Aed3g2625 291 SMART cbf3 132 193 IPR001289 GO:0003700|GO:0006355
Aed3g2625 291 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 40 282 - -
Aed3g2625 291 ProSiteProfiles NF-YA/HAP2 family profile. 133 193 IPR001289 GO:0003700|GO:0006355
Aed3g2625 291 MobiDBLite consensus disorder prediction 1 24 - -
Aed3g2625 291 MobiDBLite consensus disorder prediction 205 237 - -
Aed3g2625 291 MobiDBLite consensus disorder prediction 213 235 - -
Aed3g2625 291 MobiDBLite consensus disorder prediction 1 90 - -
Aed3g2625 291 PRINTS CCAAT-binding transcription factor subunit B signature 167 190 IPR001289 GO:0003700|GO:0006355
Aed3g2625 291 PRINTS CCAAT-binding transcription factor subunit B signature 136 158 IPR001289 GO:0003700|GO:0006355
Aed3g2625 291 MobiDBLite consensus disorder prediction 72 90 - -
Aed3g2625 291 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 135 190 IPR001289 GO:0003700|GO:0006355
Aed3g2625 291 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 40 282 IPR001289 GO:0003700|GO:0006355
Aed3g2625 291 ProSitePatterns NF-YA/HAP2 subunit signature. 138 158 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2625 Aed-Chr3 28147670 28152896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2625 1 290 CCAAT-HAP2 Transcription Factor Family AT3G20910 43.077 1.33e-60 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aed3g2625 CBFB_NFYA 9.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2625 K08064 - gmx:102664020 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2320 4 25672077 25677769 Aed3g2625 3 28147670 28152896 PCT