Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2610 ATGAATTCTAGGTGTTTCCTTGTTCATCCACAACAAGAGTTTAGCATGGTTACATTTTCTTCAAATTCTGCCGCCACAGAAGATAGAGTGGCTAGTGCTCGAAACAGGCCTCCACGTGTCACCCCTCCTTCCTTTTTGGTTAGGATAGCCATGAGAATATCTAGAGCAAGATGGTTTACCTTTTTGAGAAGAGTTTTTCATTACCAAAATGGATCAAGGTCCAACCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTTATTGCCTTGATTGTCCAAATAACCATTACAACTTTCACTCTGGCCATTTCCAAGAGGGAGAGACCTATTTGGCCTATGAGGATATGGATTTCTGGTTATGATATCGGTTGTGCTCTTAATCTTCTACTACTTTATGGGCGCTACCATCAAATTTATCTGACACAAGGAGATGCTCTCAGCCTTTCTGATATGGAACATCAGAGAAACAATGAAGAAACCAGTGTGTACAGGATGTCACACTTGATGAATAAATGTCGGACTTCACTTGAACTTTTCTTCGCCATATGGTTTGTGATGGGCAATGTTTGGGTTTTTGACTCACGTTTTGGATCTTTTCATCAAGCTCCAAAGCTTCACGTGCTCTGCATCATTCTCCTTGCTTGGAATGCAATGTGCTACTCTTTCCCCTTCCTACTGTTTGTGTTGTTATGCTGCTGTGTGCCACTAATTAGCACCCTCCTCGGCTACAACATGAACATCGCCTCTTCTGATAAAGGAGCTTCTGATGATCAAATTTCACAACTTTCTAGTTGGAGACATAAAGAAGCTAATGCCAAATTGGAGCTTGGCAATGATTCCGAAGGCAGTGAAAAATTTATCAATGAAGAACCGGAATGTTGTATCTGTTTAGCCAAGTATAAAGACAAAGAGGAAGTTAGACAATTGCCCTGTTCCCATATGTTCCACCTAAAATGTGTGGATCAATGGCTAAAAATTACATCTTGTTGCCCTCTTTGCAAACAAGGATTACAGAGGTAG 1032 0.4118 MNSRCFLVHPQQEFSMVTFSSNSAATEDRVASARNRPPRVTPPSFLVRIAMRISRARWFTFLRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALIVQITITTFTLAISKRERPIWPMRIWISGYDIGCALNLLLLYGRYHQIYLTQGDALSLSDMEHQRNNEETSVYRMSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFHQAPKLHVLCIILLAWNAMCYSFPFLLFVLLCCCVPLISTLLGYNMNIASSDKGASDDQISQLSSWRHKEANAKLELGNDSEGSEKFINEEPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLKITSCCPLCKQGLQR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2610 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 342 IPR013083 -
Aed3g2610 343 CDD RING-H2_RNF111_like 295 338 - -
Aed3g2610 343 Pfam Ring finger domain 296 338 IPR001841 -
Aed3g2610 343 SMART ring_2 297 337 IPR001841 -
Aed3g2610 343 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Aed3g2610 343 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 342 - -
Aed3g2610 343 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 342 - -
Aed3g2610 343 SUPERFAMILY RING/U-box 289 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2610 Aed-Chr3 28053413 28056233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2610 23 341 C3H Transcription Factor Family AT4G26580 66.875 2.75e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2610 - - gmx:100813670 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2610 3 28053413 28056233 Aed3g2610 3 28053413 28056233 ECH