Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2590 ATGAGTAATCCGTCATCGAATCCAATGGCAGGAAAGTTGTCCGTGGAAGCACAAACTTATCGATTAACAACGGTCCAGAAGTCAACTCAACGCAGTGTTGAATTCATTCGTTCATTCATTCCTTACGCATTTGGAAAGTTAATAGCGCGCATGAGCATGGCTGACTCGGACAACGACTCGGGCGGGGCGGGGAACGCTGGAAACAGTGGGAACTTCAGCGAGTTGTCGCCTCGGGAACAGGACCGGTTTCTCCCGATCGCTAACGTGAGCAGGATCATGAAGAAGGCTCTCCCAGCGAACGCGAAGATCTCGAAGGACGCAAAGGAGACGGTGCAGGAATGCGTATCGGAGTTCATCAGCTTCATAACGGGGGAAGCCTCCGACAAGTGCCAGAGGGAGAAGCGTAAGACCATCAACGGCGACGACCTTCTATGGGCCATGACCACCCTCGGTTTCGAAGACTACGTCGACCCTCTCAAGGTTTACCTCCAGCGCTTCCGCGAGATGGAGGGCGAGAAGACCGTTGCTGCCCGCGACAAGGACGCTGCCACCTCCTCCGCTCTCAGCCCATACGACTACCCTCCCTCCGCCGCCGCCGCCATCATGCATCATCATCATCAGGGACACGTGTACGGTTCCCCCGCCTACCATCATCAAGTGCCTGCCACTGCCGCCAGTGCCACTCCTGTTATGGGTAAGCCTGGGTCTGGGCCCACTTATCCTGCCCCTGGTAGACCCAGATAG 744 0.5645 MSNPSSNPMAGKLSVEAQTYRLTTVQKSTQRSVEFIRSFIPYAFGKLIARMSMADSDNDSGGAGNAGNSGNFSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKVYLQRFREMEGEKTVAARDKDAATSSALSPYDYPPSAAAAIMHHHHQGHVYGSPAYHHQVPATAASATPVMGKPGSGPTYPAPGRPR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2590 247 MobiDBLite consensus disorder prediction 56 77 - -
Aed3g2590 247 MobiDBLite consensus disorder prediction 224 247 - -
Aed3g2590 247 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 53 188 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aed3g2590 247 SUPERFAMILY Histone-fold 80 183 IPR009072 GO:0046982
Aed3g2590 247 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 83 147 IPR003958 -
Aed3g2590 247 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Aed3g2590 247 PRINTS CCAAT-binding transcription factor subunit A signature 149 167 - -
Aed3g2590 247 PRINTS CCAAT-binding transcription factor subunit A signature 130 148 - -
Aed3g2590 247 MobiDBLite consensus disorder prediction 58 76 - -
Aed3g2590 247 Gene3D Histone, subunit A 72 193 IPR009072 GO:0046982
Aed3g2590 247 ProSitePatterns NF-YB/HAP3 subunit signature. 114 130 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aed3g2590 247 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 53 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2590 Aed-Chr3 27953225 27954072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2590 53 177 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.600 7.65e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed3g2590 CBFD_NFYB_HMF 2.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2590 K08065 - gmx:100500556 270.396