Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2582 ATGACGGTGGATGAAGAAGGTATAACATCCAATGTTGGTGGTCGAGTTATTGTCGTCGACCAAACTGGTAACGGAGATTCAACAACTGTTCAAGGGGCTGTAGACATGGTTTCCCAAAACAACACAGAAAGGGTCAAGATATACATTCTTCCTGGAATTTATAGAGAAAGAGTGCATGTGCCGAAAAGCAAGCCGTTTATTTCATTTATAGGTAAAGCTAATATAACATTGAATGGGAGAGAGGCAAATATAACGGCGAATTCAAACGCAGTAAACATAACGGAGATAGCGAATGCCATACCTATTATCACAAATAGTACTAAGGCATCAGACAAAGGCTCTGATGGCCAAGAAATGGGCACGGTTAGTACAGCAACTGTGTGGGTAGAATCTGATTTCTTCTGCGCAACTGCTCTTACAATTCAGAATTTGGTAGAAAAAGATGCAGAGAAACGTCAAGCAGTGGCATTGCGTGTAGACGGTGATAAAGCTGAGTGTGTACTACAGTCTGTAGCTGAGTTTTGGGGAGCAATTGCAGCTCATCACAGGGAATCAGCAGAAGAAGATACCGGGACTGCGATGTTTGGGGAGTATGAATGTTCAGGAAAAGGATCAAACAGAACTGAGAGAGTGGAATGGTCAAAAGCTTTAAGCAGTGATGAAGCCATGCCTTTCATGGGCAGAGACTACATATATGGAGACGGATGGCTTAGACTATAA 720 0.4264 MTVDEEGITSNVGGRVIVVDQTGNGDSTTVQGAVDMVSQNNTERVKIYILPGIYRERVHVPKSKPFISFIGKANITLNGREANITANSNAVNITEIANAIPIITNSTKASDKGSDGQEMGTVSTATVWVESDFFCATALTIQNLVEKDAEKRQAVALRVDGDKAECVLQSVAEFWGAIAAHHRESAEEDTGTAMFGEYECSGKGSNRTERVEWSKALSSDEAMPFMGRDYIYGDGWLRL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2582 239 PANTHER PECTINESTERASE QRT1 191 239 - -
Aed3g2582 239 Pfam Pectinesterase 107 172 IPR000070 GO:0030599|GO:0042545
Aed3g2582 239 Pfam Pectinesterase 17 74 IPR000070 GO:0030599|GO:0042545
Aed3g2582 239 SUPERFAMILY Pectin lyase-like 14 237 IPR011050 -
Aed3g2582 239 PANTHER PECTINESTERASE QRT1 10 164 - -
Aed3g2582 239 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 191 239 - -
Aed3g2582 239 Gene3D - 169 239 IPR012334 -
Aed3g2582 239 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 10 164 - -
Aed3g2582 239 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 165 193 - -
Aed3g2582 239 PANTHER PECTINESTERASE QRT1 165 193 - -
Aed3g2582 239 Gene3D - 2 168 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2582 Aed-Chr3 27919352 27921004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2582 15 204 Carbohydrate Esterase AT5G55590 44.068 1.06e-49 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2582 K01051 - gmx:100812850 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2582 3 27919352 27921004 Aed3g2582 3 27919352 27921004 ECH