Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2573 ATGGATTCTCCCTACACAAGTATAGTCTTTGATAGAATTCAGAAATTTGAGCCAGAGCATGCTAGAAAGATAATTGGTTATCTTCTATTTCAAGGCCATGGAGAACAAGAAATGGCTAAATTGGCTTCATGTCCCGACTATTTCATCCGTGAAGTGGCAATTCAGGCCAAAAAGGAACTCCAAAAGTTAGCTGCTAAACCGGATATGCTCCCAATTTCACAGACTGTCAACCCTCAACAAGGTTTAAGCGATTTATCAGTAATCTCCCCTAGAACTCCTACTTCACCAAACTTTCAGGTGCCTTCTCCCTATTGGGATCCACAATCTGCTGGCAACATCAATCCAGACTTTATGGGAATGAACTATTTGGATTCTATTGTAGAACTTCAGAAGCAGACACAGATGCTCACTTTGGAGAATCAAATAGATGCTGTAAGTACTGGGGCTGAAGGCATTCCCAACGATTACTATGGCTTAGATGCTTCTGCTGCCCATGTGGGTGGAAAAGCTGGGAGAAGGTTTTCTGAATTTCCAATGAAGATATGTCACTATTTCAACAAAGGATTCTGTAAGCATGGAACTAGCTGCAGATTCTATCACGGGCAAGTTGTCCCTGAGAATTTCTCTCAGATGTATGGAAATGATGCTATTAGTGAGGATCAATTGGTCATTTCCCCAGGGTCACTGGCACAGTTAGAGTCAGAAATTATTGAGCTCCTTAGATCAAGAGGTGGTCCCATGTCAATTGCTTCCCTGCCAATGGCATACTATGATAGATATAAAAAGGTTCTGCAAGCAGATGGTTACTTAACTGAGAGCCAGAGGCATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTTGCCCGACTGAAAAGTAGTATTCGGCTAATTGGCAGACCTCATGGGCAGCATTCAGTGGTTCTGGCAGAAGATGCTCCCACACAAATGCAAAAGGAAGATTTTGGTCGAAATATCAGTGCTTCACGGCAAATATATCTGACATTCCCAGCTGACAGCACTTTCACAGAGGATGATGTCTCAAATTACTTCAACACATTTGGACCTGTTGCAGATGTCAGAATTCCAAACCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGTTCATTCAGAAACCGTCAAAACTGTTTTGGATAAGGGGAATCCCCATTGTGTTCAGGGTTCTCGGGTGCTCGTGAAACCTTACCGGGAGAAGGCGAAGGTTAATGAAAGTTCTTCTTCCTTGTTCTCCCCTTTTCTCATTGAAAAAAGAGAGGACAAGAGACAAAGGATAAACACAATAAATAATGTTCCAAGAAGTTTTGGGAACCATAGATCCATTAGAAGACAACTACAGCTGATTGAAGAAGAAGGGCAGGAGCAAGTTCTGGAACATAAAAGGAGAAGTCTTGCGCAGTTGCAGTTTACCCAAAAATCTTTCTCCAGTTCACCTCATTTTGGCTTCTCCATGGATGAGTCAAGGATTCCAGATGATCATTTCAATCTCCAGCCAGCAGAAGAATCTTTCAGTTTTCCACTACATTCTAAATCCAGGCATACAAACTTCAATTACTCTGATGAGGACAGCAATCAAGGACTCAATCTCCCAGACAGTCCATTCACATTTCCACTGGATATGTAA 1641 0.4205 MDSPYTSIVFDRIQKFEPEHARKIIGYLLFQGHGEQEMAKLASCPDYFIREVAIQAKKELQKLAAKPDMLPISQTVNPQQGLSDLSVISPRTPTSPNFQVPSPYWDPQSAGNINPDFMGMNYLDSIVELQKQTQMLTLENQIDAVSTGAEGIPNDYYGLDASAAHVGGKAGRRFSEFPMKICHYFNKGFCKHGTSCRFYHGQVVPENFSQMYGNDAISEDQLVISPGSLAQLESEIIELLRSRGGPMSIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYSLTKLLARLKSSIRLIGRPHGQHSVVLAEDAPTQMQKEDFGRNISASRQIYLTFPADSTFTEDDVSNYFNTFGPVADVRIPNQQRRMFGFVTFVHSETVKTVLDKGNPHCVQGSRVLVKPYREKAKVNESSSSLFSPFLIEKREDKRQRINTINNVPRSFGNHRSIRRQLQLIEEEGQEQVLEHKRRSLAQLQFTQKSFSSSPHFGFSMDESRIPDDHFNLQPAEESFSFPLHSKSRHTNFNYSDEDSNQGLNLPDSPFTFPLDM 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2573 546 ProSiteProfiles OST-type HTH domain profile. 228 310 IPR025605 -
Aed3g2573 546 Gene3D - 174 230 - -
Aed3g2573 546 ProSiteProfiles Zinc finger C3H1-type profile. 176 203 IPR000571 GO:0046872
Aed3g2573 546 Pfam OST-HTH/LOTUS domain 228 306 IPR025605 -
Aed3g2573 546 SUPERFAMILY CCCH zinc finger 178 201 IPR036855 GO:0046872
Aed3g2573 546 SMART rrm1_1 330 400 IPR000504 GO:0003723
Aed3g2573 546 MobiDBLite consensus disorder prediction 522 546 - -
Aed3g2573 546 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 202 IPR000571 GO:0046872
Aed3g2573 546 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 545 - -
Aed3g2573 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 329 413 IPR000504 GO:0003723
Aed3g2573 546 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 545 - -
Aed3g2573 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 395 IPR000504 GO:0003723
Aed3g2573 546 Gene3D - 330 410 IPR012677 -
Aed3g2573 546 MobiDBLite consensus disorder prediction 522 537 - -
Aed3g2573 546 CDD RRM_AtC3H46_like 331 400 IPR034365 -
Aed3g2573 546 SMART c3hfinal6 176 202 IPR000571 GO:0046872
Aed3g2573 546 SUPERFAMILY RNA-binding domain, RBD 339 409 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2573 Aed-Chr3 27861288 27867305 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2573 - - gmx:100818984 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2573 3 27861288 27867305 Aed3g2573 3 27861288 27867305 ECH
Aed4g2410 4 26332222 26336692 Aed3g2573 3 27861288 27867305 PCT