LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed3g2568	ATGGACTCCTCCGCCGCCACCAACTCCGGCGAACCTCAGCCGAATTCGGAGCTCCAAATGAATGGGACTTCCGAGGATCCGATTCGAAGCGAGTCGGGTCAGAATTCGACGGCGAGGTACAAGCTGATGTCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCTCCGGGGCTCAGTCCCACGTCGTTTCTGGAATCCCCTATTCTTCTTTCCAACATGAAGGTGGAGCCTTCACCAACTACAGGGTCCCTCCGTAAGCTCCAACAAACAGTACATGGTTCTATGGTTTCTGCTGCCTCTGCTACATTTCCAGTGACCACTGCCTGCTTCAATACCGATACTGTTGATGACAGAAAATCAAGCTTCTTTGAGTTTAAACCACTCAATAGATCGAATATGGTTCCTACAGACTTCAACAACAAACAATATACTCAAGTAGAAGGTCCAGGAAAAGCTCAATCATTTGCTTCCTCACCATTAGTTGAAAGTGAGATAGCAGTTCCTTCTAATGAATTAAGCCTATCATCACCTGTACATATGGTTAGTTCTAGTGCTAGTGCTCCTGTTGATGTTGATTTGGATGACATTAACCACAAAGGCAACACAGCTACTGGGCTTCAAGCATCACGTGTTGAGGTTAGAGGCAGTGTACTTTCAGTTGCAGCTGAGAAAACATCTGATGATGGATACAATTGGCGAAAATACGGGCAAAAGCTTGTTAAAGGAAGTGAATTTCCTCGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGACGGTCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCTGCCGATACTCTACTGGAACTGTTATGTCTATTCAAGGAGAGAGATCTGATAAGGCTTCTTCTTTGGCTGGCCGAGATGACAAAGCATCCACTATGTATGGTCAGGCATCTCATACTGCTGAGCCCAACAGTACTCCAGAGTCATCACCTGTAGCAACAAATGATGATGGTTTAGAGGGTGCTGGGTTTGTGTCAAACAGGACTAATGAAGAGGTTGATGATGACGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGTTGACATCATTCCTGTAGTTAAGCCTATCCGGGAACCACGGGTTGTTGTACAAACTTTGAGTGAGGTTGACATATTGGATGATGGGTACCGCTGGCGTAAGTATGGACAAAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCTGTCAGAAAGCATGTGGAGAGGGCATCGCATGATCCGAAAGCAGTGATAACCACATATGAGGGTAAACACAATCATGATGTACCAGCTGCAAGGAATAGCAGCCATGACATGTCAGTACCAGCGGCTGCAGCTGGTGGACATACAAGAATTAAGTTAGAAGAAAGTGATACCATTAGCCTTGACCTTGGGATGGGAATTAGCTCACCTGCTGAACATAGATCAAATGGGCATGGGAAAATGCTGCTGCATTCAGAGTTTAGGGATACACAAACTCAGACCAGCAATTCCAATTTCAAGTTTGTTCATACGAGCTCAGCTCCAGTATGCTTTGGTGTTCTAAATAACAGCTCAAATCCCTATGGTTCTAGTTCTAGAGACAATAGGAGTGATGGTCCATCTTTAAACCATTCCTCATATCCTTGCCCACAGAGCATGGGAAGAATACTAATGGGTCCATGA	1773	0.4501	MDSSAATNSGEPQPNSELQMNGTSEDPIRSESGQNSTARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPILLSNMKVEPSPTTGSLRKLQQTVHGSMVSAASATFPVTTACFNTDTVDDRKSSFFEFKPLNRSNMVPTDFNNKQYTQVEGPGKAQSFASSPLVESEIAVPSNELSLSSPVHMVSSSASAPVDVDLDDINHKGNTATGLQASRVEVRGSVLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPSCRYSTGTVMSIQGERSDKASSLAGRDDKASTMYGQASHTAEPNSTPESSPVATNDDGLEGAGFVSNRTNEEVDDDDPFSKRRKMELGNVDIIPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMSVPAAAAGGHTRIKLEESDTISLDLGMGISSPAEHRSNGHGKMLLHSEFRDTQTQTSNSNFKFVHTSSAPVCFGVLNNSSNPYGSSSRDNRSDGPSLNHSSYPCPQSMGRILMGP	590

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed3g2568	590	MobiDBLite	consensus disorder prediction	324	344	-	-
	Aed3g2568	590	SUPERFAMILY	WRKY DNA-binding domain	398	466	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2568	590	MobiDBLite	consensus disorder prediction	305	370	-	-
	Aed3g2568	590	MobiDBLite	consensus disorder prediction	558	590	-	-
	Aed3g2568	590	MobiDBLite	consensus disorder prediction	558	580	-	-
	Aed3g2568	590	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	29	568	IPR044810	GO:0003700
	Aed3g2568	590	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	29	568	-	-
	Aed3g2568	590	ProSiteProfiles	WRKY domain profile.	225	289	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2568	590	SMART	WRKY_cls	230	288	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2568	590	SMART	WRKY_cls	406	465	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2568	590	Gene3D	WRKY domain	391	467	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2568	590	Gene3D	WRKY domain	217	290	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2568	590	SUPERFAMILY	WRKY DNA-binding domain	226	289	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2568	590	MobiDBLite	consensus disorder prediction	1	39	-	-
	Aed3g2568	590	Pfam	WRKY DNA -binding domain	407	463	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2568	590	Pfam	WRKY DNA -binding domain	231	287	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Aed3g2568	590	ProSiteProfiles	WRKY domain profile.	401	466	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed3g2568	Aed-Chr3	27840832	27846546	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed3g2568	43	590	WRKY Transcription Factor Family	AT4G26640	55.835	0.0	526

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Aed3g2568		WRKY	1.5e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed3g2568	-		-	gmx:100816583	1064.29

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed3g2568	3	27840832	27846546	Aed3g2568	3	27840832	27846546	ECH
	Aed4g2412	4	26356684	26362124	Aed3g2568	3	27840832	27846546	PCT