Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2565 ATGATGCCGAGTGTTAACCCAGAGAAAGATTCAGAGCCATTTGTTGAGACCGATCCAACCGGTCGCTATGGAAGATACAGTGAGTTACTTGGTTGTGGTGCTGTGAAGAAAGTGTACAGAGCATTTGATCAAGAAGAAGGAATAGAAGTGGCATGGAACCAGGTGAAGCTGAGGAACTTCTGTGATGACCCTGCCATGGTGGATAGGCTTTACTCTGAAGTGAGGTTGCTTAGAAGCTTGACCAACAAAAACATCATTGCACTTTACAGTGTGTGGAGGGATCAGCAGCGTAACACTTTGAATTTCATCACTGAGGTTTGCACAAGTGGAGATTTGAGGGAGTATAGGAAGAAGCATAGGCATGTTTCCATAAAGGCCCTTAAGAAGTGGTCTAAGCAGATTTTGAAAGGCTTGAATTATCTGCACTTGCATGATCCCTGCATCATCCACAGAGATCTCAATTGCAGCAATGTGTTTGTCAATGGGAATACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCAATTGTGGGGAAGAACCATTGTGCACACACGATTCTTGGCACACCAGAATTTATGGCTCCAGAGTTATACGATGAAGACTACACAGAATTGGTGGACATATACTCATTTGGGATGTGTGTATTGGAGATGGTGACACTTGAGATTCCTTATAGTGAATGTGACAATGTTGCTAAGATATACAAGAAGGTGTGTTCTGGAATTAGACCTGCTGCATTGAACAAGGTCAAAGATTCAGAGGTGAAGGCCTTCATTGAGAAGTGCCTTGCTCAGCCAAGGACTAGGCCTTCTGCAGCTGAGCTTCTAAGAGATCCCTTCTTTGATGAGATTCTTGATGATGACGAAAATGATGACTGTGCTTGTTCATACCAATAA 900 0.4356 MMPSVNPEKDSEPFVETDPTGRYGRYSELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFCDDPAMVDRLYSEVRLLRSLTNKNIIALYSVWRDQQRNTLNFITEVCTSGDLREYRKKHRHVSIKALKKWSKQILKGLNYLHLHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKNHCAHTILGTPEFMAPELYDEDYTELVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVCSGIRPAALNKVKDSEVKAFIEKCLAQPRTRPSAAELLRDPFFDEILDDDENDDCACSYQ 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2565 299 Pfam Protein kinase domain 27 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2565 299 SUPERFAMILY Protein kinase-like (PK-like) 19 288 IPR011009 -
Aed3g2565 299 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 2 299 - -
Aed3g2565 299 CDD STKc_WNK 22 282 - -
Aed3g2565 299 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Aed3g2565 299 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Aed3g2565 299 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2565 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2565 Aed-Chr3 27828190 27831131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2565 8 286 MAP Kinase Kinase Kinase AT5G55560 82.796 1.12e-179 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Aed3g2565 Pkinase 7.4e-51 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2565 3 27828190 27831131 Aed3g2565 3 27828190 27831131 ECH
Aed4g2414 4 26377943 26380024 Aed3g2565 3 27828190 27831131 PCT