Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2558 ATGCCGGACCAAGATATTTGCAGTTACCTTAATGAACCTCGTCCTATAGCCAGAAAGTTCTTGGCAAGACCTCAACATGAGGGTGTTGGAGCCGTTGTTAGAAGAAGCATAGGGAGATTTGAGCTCAAGTACTTTGATCCTTTCCTTGTCTTGGATGAATTCTCAGTCACTGCTCCTGCTGGGTTTCCTGATCATCCACATAGAGGATTTGAGACTGTCACATACATGTTGCAGGGAGCTATAACGCATGAAGATTTTGAAGGACATAAGGGAACAATTGAAGCTGGTGACTTGCAATGGATGACTGCAGGGAGAGGGATACTTCACTCAGAAATGCCTGCAGCTCAAGGAACCCAAAAGGGTCTCCAACTGTGGATCAACCTTGCTTCAAAACATAAAATGATTGAACCAAGGTACCAAGAAATGTTGAGCAAGGACATAGCTGAAACAATGATAGATGGTATAAAAGTTAGAGTTATAGCAGGGGAAGCTCTTGGAATAAAGTCTCCAATCTACACAAGGACACCAACCATGTACTTGGATTTTACTCTTAAACCTGGTGCTCACTTGCAACAACTTATACCAAAATCTTGGAATGCTTTTGTGTACATATTGGAAGGAGAGGGTGTCTTTGGAAACCAAAAGGCTCAACCTGTAACCTCTCACCATATACTTCTTCTTGGATCTGGGGATGGCCTAGAGGCATGGAACAAATCTTCTAAGGTCCTTAGGTTCATTTTGGTTGGAGGTGAACCATTGGGGGAACCTGTGGTGCAATTTGGACCTTTTGTGATGAATACTCAAGAAGAGATTGACCAGACAATTGATGATTTTGATAACTATACCAACGGATTTGAGAAAGCTAGACATTGGAGGTCTGAAACTGCAATTAGCCTTGATTATTGA 906 0.4227 MPDQDICSYLNEPRPIARKFLARPQHEGVGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAITHEDFEGHKGTIEAGDLQWMTAGRGILHSEMPAAQGTQKGLQLWINLASKHKMIEPRYQEMLSKDIAETMIDGIKVRVIAGEALGIKSPIYTRTPTMYLDFTLKPGAHLQQLIPKSWNAFVYILEGEGVFGNQKAQPVTSHHILLLGSGDGLEAWNKSSKVLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDFDNYTNGFEKARHWRSETAISLDY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2558 301 CDD cupin_pirin_N 31 128 - -
Aed3g2558 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Aed3g2558 301 Pfam Pirin 33 126 IPR003829 -
Aed3g2558 301 PANTHER - 5 299 - -
Aed3g2558 301 SUPERFAMILY RmlC-like cupins 15 293 IPR011051 -
Aed3g2558 301 CDD cupin_pirin_C 176 252 - -
Aed3g2558 301 PANTHER PIRIN-RELATED 5 299 IPR012093 -
Aed3g2558 301 PIRSF Pirin 12 292 IPR012093 -
Aed3g2558 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Aed3g2558 301 Gene3D Jelly Rolls 27 279 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2558 Aed-Chr3 27793847 27798015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2558 13 289 Calmodulin-binding Proteins AT3G59220 59.140 3.53e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2558 K06911 - gmx:100811930 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2558 3 27793847 27798015 Aed3g2558 3 27793847 27798015 ECH
Aed4g2425 4 26491932 26495072 Aed3g2558 3 27793847 27798015 PCT