Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2551 ATGGCGTCTTCTTCAGACTCGTGGGTGAAGGAGTATAATGAAGCACTTAAACTTGCTGATGATATCAGTGGCATGATTTCTGAGCAGAGCTCATTTCCTGCATCTGGACCAGAAACTCAGCGTCATTCATCTGCTATAAGAAGAAAGATTACAATATTGGGGACCAGGCTTGATAGCTTGCAATCCCTTTTGTCCAAGCTTCCTGGAAAGCAGTCCATATCTGAGAAGGAGATGAATCGTCGCAAGGACATGCTTGCAAATTTGAGATCAAAAGTTAATCAAATGGCTTCCACGTTGAACGTGTCAAACTTTGCATATAGGGATAGTTTGATTGGGCCGGAAAGAAAATCAGATGCAATGACCAGGACTGTTGGCCTGGACAACAATGGACTTGTTGGACTTCAACGGCAAATTATGAAAGAACAAGACGATGGCCTTGAGCAATTGGAAGAGACTATAGCAAGCACAAAACATATTGCATTGGCAGTTAATGAAGAGCTGGATCTCCACACTAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTTAGGCGGGTGCAGAAGAACTTAACAGTTTTAAATAAGCGAATCAAAGGTGGTTGCTCTTGCCTGTGCATGCTTTTATCAGTGATCGGTATAGTGGTTTTGGTTCTTGCCATTTGGCTATTGGTCAAATATTTGTAA 699 0.422 MASSSDSWVKEYNEALKLADDISGMISEQSSFPASGPETQRHSSAIRRKITILGTRLDSLQSLLSKLPGKQSISEKEMNRRKDMLANLRSKVNQMASTLNVSNFAYRDSLIGPERKSDAMTRTVGLDNNGLVGLQRQIMKEQDDGLEQLEETIASTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLTVLNKRIKGGCSCLCMLLSVIGIVVLVLAIWLLVKYL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2551 232 CDD SNARE_Qc 139 195 - -
Aed3g2551 232 Pfam SNARE domain 173 223 IPR000727 -
Aed3g2551 232 SUPERFAMILY SNARE fusion complex 127 197 - -
Aed3g2551 232 PANTHER SYNTAXIN 1 225 IPR045242 -
Aed3g2551 232 Coils Coil 146 166 - -
Aed3g2551 232 Gene3D - 138 200 - -
Aed3g2551 232 SUPERFAMILY t-snare proteins 21 100 IPR010989 GO:0016020|GO:0016192
Aed3g2551 232 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 198 IPR000727 -
Aed3g2551 232 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 225 - -
Aed3g2551 232 SMART tSNARE_6 131 198 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2551 Aed-Chr3 27746385 27748929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2551 1 232 SNARE and Associated Proteins AT1G16240 69.957 2.37e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2551 K08503 - gmx:100782666 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2551 3 27746385 27748929 Aed3g2551 3 27746385 27748929 ECH
Aed4g2440 4 26585181 26587320 Aed3g2551 3 27746385 27748929 PCT