Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2540 ATGGAGATAGTTCTTCGACCTGTCCTTTTTCCTCTTGTATTGTTGTTTCTTTGCTTCTGGGTTGGATCAGTAGCCATGGATTGTGGGGGGAACATAATCGTACATACCATCGTAGTTGATCAACAAGGTAAAGGAGAATTCACAACGGTTCAAGATGCCCTTGATTCGATAATGGAAAACAAGGATCGATGGGTCAAAGTTCACATAAATGCTGGCACATACACAGAGAAAGTTGAAATTTCCAATTACAAGTCGTGCATCTTTTTAGAAGGTGCGGGCAAAGAGGTTACGACCATTACATCAAATGGTTACCACAGCCCTTCTTACGCGAACAGCCAAGGTGATAACACGGGTGCTACATTCGTTTCTTCTCCACCCAATGTTATTGTTATTGGTATTAACTTCCAGAACTCGCTTAATCTGAGGGGATCACAATCCATCGCACCTGCACCAGCTGCAGCCATATATGGTGATAAATCTGTGTTCTTTAATTGTGGTTTCCTAAGTTATCAAGATACTTTGTTTGATGCGAGAGGACGTCATTATTTCAAAGATTGCACTATTGGAGGTGAAGTGGACTTCATTTATGGAGGTGGTCAAACTTATTATGAGGCCTGTACCATTAATGCTACGCAGGACAGAGGTTTTTCAGGTTTTATAACGGCCCAATCCCGGGATTCAGAAAATGATGAAAATGGTTTTGTATTTAGAGGTGGTTCTGTGATTGGAATTGGTGAAATGAATCTTGGAAGAGCCTGGCGACTTTATTCGAGAGTTATATTTCACGGAACATACTTATCTTCAATTGTAACATCTCAAGGATGGAATGCTTGGCATTACATAGGCCAAGAGTCCAAGTTAACTTTTGCGGAGTTTGATTGTACTGGACCAGGAGCGATTACTGCAAAACGCGTTCCATGGGTAAAAAACCTTACTGCTTCACAGTTAAATGACTTTTCTTTATCATCTTTTATCAACCAAGATGGCTGGATTTCCAACGTTTTAGGGTTTTATAATCCCAAATCTGGGTTAATGCAAGATTGGTATATATAG 1053 0.4036 MEIVLRPVLFPLVLLFLCFWVGSVAMDCGGNIIVHTIVVDQQGKGEFTTVQDALDSIMENKDRWVKVHINAGTYTEKVEISNYKSCIFLEGAGKEVTTITSNGYHSPSYANSQGDNTGATFVSSPPNVIVIGINFQNSLNLRGSQSIAPAPAAAIYGDKSVFFNCGFLSYQDTLFDARGRHYFKDCTIGGEVDFIYGGGQTYYEACTINATQDRGFSGFITAQSRDSENDENGFVFRGGSVIGIGEMNLGRAWRLYSRVIFHGTYLSSIVTSQGWNAWHYIGQESKLTFAEFDCTGPGAITAKRVPWVKNLTASQLNDFSLSSFINQDGWISNVLGFYNPKSGLMQDWYI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2540 350 SUPERFAMILY Pectin lyase-like 36 332 IPR011050 -
Aed3g2540 350 Pfam Pectinesterase 37 327 IPR000070 GO:0030599|GO:0042545
Aed3g2540 350 PANTHER PECTINESTERASE 1 334 - -
Aed3g2540 350 Gene3D - 31 338 IPR012334 -
Aed3g2540 350 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2540 Aed-Chr3 27672951 27674269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2540 10 284 Carbohydrate Esterase AT2G19150 41.993 4.60e-66 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2540 - - gmx:100803932 500.745