Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2534 ATGCGGAAGGGAAGAGGAGGAGCCGCGGCGATGGCGGCGGAGGTGAACGGATCCGTTTTAAAGGAGCCCCGGTACCGGGGCGTGAGGAAGAGACCGTGGGGGAGATTCGCGGCGGAGATCAGAGACCCGTTAAAGAAAGCGAGGGTTTGGTTGGGAACCTTCGATTCTGCCGAGGATGCTGCACGAGCCTACGACGACGCCGCTCGGACTCTCCGAGGTCCCAAGGCCAAAACTAATTTCCCTCTCTCCCCTTTTTGCTACCCACACCCCTCAACCGATCCTTTCTTCTACTCGGGTTTCCACCCCACCAACCCTCAGAGACCCACTTCAAGTGGCATGAGTAGCACCGTTGAGTCCTTCAGTGGGCCCCGCCCTCCCACCACCACCACCACAACAACAACTACGACGCCATTTTTGACCGCTACGCGGAGATACCCGCGCACTCCCCCTCTTGTCCCCGAAGACTGCCACAGTGGCTGCGACTCCTCGTCCTCTGTCGTCGACGACGGTGACGACAACATCGTTTCGTCGTCGTTTCGACCTCCCTTGCCGTTCGATCTCAACGCGCTGCCGTTTGATGATGCTGTCGCGGATGATGATCTTCGCTGCACCGCGCTTTGTCTCTGA 627 0.5933 MRKGRGGAAAMAAEVNGSVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAARAYDDAARTLRGPKAKTNFPLSPFCYPHPSTDPFFYSGFHPTNPQRPTSSGMSSTVESFSGPRPPTTTTTTTTTTPFLTATRRYPRTPPLVPEDCHSGCDSSSSVVDDGDDNIVSSSFRPPLPFDLNALPFDDAVADDDLRCTALCL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2534 208 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Aed3g2534 208 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Aed3g2534 208 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Aed3g2534 208 MobiDBLite consensus disorder prediction 103 142 - -
Aed3g2534 208 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Aed3g2534 208 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Aed3g2534 208 PANTHER ETHYLENE RESPONSE FACTOR 4 191 - -
Aed3g2534 208 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 191 - -
Aed3g2534 208 SUPERFAMILY DNA-binding domain 24 83 IPR016177 GO:0003677
Aed3g2534 208 MobiDBLite consensus disorder prediction 103 167 - -
Aed3g2534 208 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Aed3g2534 208 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2534 Aed-Chr3 27653266 27653892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2534 1 208 AP2-EREBP Transcription Factor Family AT1G50640 57.872 1.33e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed3g2534 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2534 K09286 - gmx:100803943 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2534 3 27653266 27653892 Aed3g2534 3 27653266 27653892 ECH
Aed4g2454 4 26689256 26689894 Aed3g2534 3 27653266 27653892 PCT