Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2528 ATGGAACCCACTAGTTGGAATAATAATGATCATGCCATTGTCAATCATGATCCAGTCATCATGTCCTTTAGAGGGACACCACTTGTCATGGATGAGCTTGATTTCTTTGCTCCTCATAACACAATTCAAGAGACTACTCATCAAACGGTGGAGCTGGATGTAGATACTAGCTTAGATCTTCTTACGAAGAACAATAATACCGGTGGCAATAGATCAACACCGGAAGAAGATGCGGCGGCATTGGAAGCTATGGATGATATGAGCAACGATCGTGAGCTCGTAGCTTCGGTAACTGAATTGCACCAAATGAACGCTGAAAATCAACGTTTAAGAGAGTTGGTTGATCAGGTGAACAATAACTGCAATGCCCTACGCATGCAACTTACCAAGCCAACGAAGAAGCAGCATAGCCATGGGAATAAAGAAGATATGGTTCCAAGGTCATTTTTAGACATGAGTTGTGTTGGTGAGAATAAGGATGAGGCTGGTTCGGAGCAATCTTCAGAGGGAAAAGTGCTGAGAGAAATTATCAAAAGCACAGTTGAGTCCATGGATCAGTCATGCAAGGGGCATGGCAAAGGTATTGCTGCTAATTTGGATGAGATGGCAGATAATAAAGCTAGATCAATATTGGAAGGGATCAGGCACGCTGACCAGGATCATTTCTCTAACAAAGTTCCTAGATTGGATCCAGCTTCCAAAACCATGTCAATGATCAAGAAAGCTCGTGTTTCAGTTCGAACAAGATCCGATTCTTCAATGATTGCAGATGGATGCCAATGGCGAAAATATGGGCAGAAGATGGCGAAAGGGAATCCTTGTCCAAGAGCCTATTATCGCTGCACAATGAGTGCTGGTTGTCCAGTACGGAAACAAGTACAAAGGTGTGCTGAAGACAGGAGTGTGTTGATAACAACATATGAAGGACAGCATAACCATCCACTCCCTCCAACAGCACAGGCAATGGCATCGACCACATCTGCAGCAGCATCAATGCTTCTATCTGGATCAATGCCAAGCTCAGATGGGCTAATAAATCCAACCATATTAGAAACTAGTCACAGTTACAACATGGCAGCAACTCTCTCTGCCTCTGCTCCATTCCCCACAATCACACTTGATCTCACTCAGAATGCTGCTACCACCAACAATTCCTCCTCTTCACTTGGTCTTCTATCCCCACTTCTTACTCACGAGTTTATGTCAGTTCCTAAAATATTTGGACAGACACTTGATCAATCTAAGCTTGCTGCATACATCATGACTCTCTGCACTATTACAGCAGACCCCAATTTCACTGCAGCTCTTGTGACAGCTATAACATCTGTCATGGGTACTTCACATTCAAACACCAATGCCGCAAATAGTACTACAAGTGGAGACCATCATGAGCAGTGTAATAATAATGCATAA 1413 0.4338 MEPTSWNNNDHAIVNHDPVIMSFRGTPLVMDELDFFAPHNTIQETTHQTVELDVDTSLDLLTKNNNTGGNRSTPEEDAAALEAMDDMSNDRELVASVTELHQMNAENQRLRELVDQVNNNCNALRMQLTKPTKKQHSHGNKEDMVPRSFLDMSCVGENKDEAGSEQSSEGKVLREIIKSTVESMDQSCKGHGKGIAANLDEMADNKARSILEGIRHADQDHFSNKVPRLDPASKTMSMIKKARVSVRTRSDSSMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSAGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPTILETSHSYNMAATLSASAPFPTITLDLTQNAATTNNSSSSLGLLSPLLTHEFMSVPKIFGQTLDQSKLAAYIMTLCTITADPNFTAALVTAITSVMGTSHSNTNAANSTTSGDHHEQCNNNA 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2528 470 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 18 455 - -
Aed3g2528 470 MobiDBLite consensus disorder prediction 451 470 - -
Aed3g2528 470 ProSiteProfiles WRKY domain profile. 250 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed3g2528 470 SUPERFAMILY WRKY DNA-binding domain 247 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed3g2528 470 Gene3D WRKY domain 240 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed3g2528 470 Coils Coil 100 127 - -
Aed3g2528 470 SMART WRKY_cls 255 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed3g2528 470 Pfam WRKY DNA -binding domain 257 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed3g2528 470 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 18 455 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2528 Aed-Chr3 27615587 27617559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2528 53 455 WRKY Transcription Factor Family AT1G62300 42.704 3.64e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed3g2528 WRKY 1.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2528 - - gsj:114372133 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2560 4 27555039 27557354 Aed3g2528 3 27615587 27617559 PCT
Aed4g2459 4 26739218 26741639 Aed3g2528 3 27615587 27617559 PCT