Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed3g2527 | CACATTTGCAGCTTCTCAAAGCCGCCGCATACAGCACAGTCCTCGCTCCCCTCATCTTTGCCATCTCCGATAGTTGTCTTTATCTCTTCGCCAGAAAAAATGTGTGAAGCTGTGGAAACTGAAGAAAGGCCCAAATTCAAAGATATTAGACGCTATTTCTGCGAGTACTGCGGTATGTGCAGGTCCAAAAAAACCCTTATCACCTCTCACATCAATTTGCACCACAAGGACGAGGAGGAAAAAGCAAGAGCTGAAAGAGATACCGAAGCAGAGGCTCCGAAATCCAACATGTGCGAGGAATGTGGTGCCTCTTTCAAAAAACACGCCTATTTGTTGCAGCACATGCAAAGTCATTCCCTTGAGGTAGGGAGACCTCCTGTGAAGCCCCATCAAGGATGCCTCGGTCACGCTCTGTTCCTAATTGAGAGACCATTTGTGTGTGCTGTCGATGATTGTCAGGCAAGTTACAGAAGGAAGGACCACCTGACTCGACACCTTCTACAGCATGAAAGGAAGACTTTTAAGTGTCCTGTTGAGAATTGCAACAGTGAATTCTCTTTGCAAAGCAATATGAAAAGACACCTTGAGGAGATTCATGATGACAGTTCTACCTCTACTAGTGACAATAATCACAAACAGCATACATGTCCAGAGATTGGCTGTGGAAAAGTTTTCAGATATGCATCACAGCTACACAAACATGAAAATTCTCATGTTAAGTTAGAGTCAGTAGATGTGGTGTGCTTAGAGCCTGGTTGCATGAAACATTTCACTAATGTCCAGTGCCTTCAAGCCCATTTGAAGTCCTCCCATCAATATATTACCTGTGACATCTGTGGGACAAAGCAACTTAAGAAGAATATTAAGCGTCACCTTAGATCACATGAAGCTGATGGCAGTTCATCAGAAACCTTTCAATGCGAGTTTAAGGGTTGCAGCTGCACTTTCTCAACAAAATCTAATCTTGATAAGCATAAGAAGGCTGTGCACTTTAAGGTAAAGCCTTTTAAATGTGGGATTCTTGATTGTGGCATGAGATTTGCTTACAAACACGTGCGAGATAATCATGAAAAAACTGCCAAACATGTTTTTACCCTTGGGGATTTTGATGAAGCTGACGAAGCCTTCAGATCAAGGCCGAGGGGAGGAAGGAAGAGAAAATGTCCTACTGTTGAAATGTTAATTAGGAAGAGGGTTACCCCACCCAGTCAAATGGAGCATTGGTTATTTATGCAGGATAGTGAGTAG | 1248 | 0.4319 | HICSFSKPPHTAQSSLPSSLPSPIVVFISSPEKMCEAVETEERPKFKDIRRYFCEYCGMCRSKKTLITSHINLHHKDEEEKARAERDTEAEAPKSNMCEECGASFKKHAYLLQHMQSHSLEVGRPPVKPHQGCLGHALFLIERPFVCAVDDCQASYRRKDHLTRHLLQHERKTFKCPVENCNSEFSLQSNMKRHLEEIHDDSSTSTSDNNHKQHTCPEIGCGKVFRYASQLHKHENSHVKLESVDVVCLEPGCMKHFTNVQCLQAHLKSSHQYITCDICGTKQLKKNIKRHLRSHEADGSSSETFQCEFKGCSCTFSTKSNLDKHKKAVHFKVKPFKCGILDCGMRFAYKHVRDNHEKTAKHVFTLGDFDEADEAFRSRPRGGRKRKCPTVEMLIRKRVTPPSQMEHWLFMQDSE | 415 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed3g2527 | 415 | Gene3D | Classic Zinc Finger | 298 | 379 | - | - | |
| Aed3g2527 | 415 | Gene3D | Classic Zinc Finger | 171 | 211 | - | - | |
| Aed3g2527 | 415 | SUPERFAMILY | beta-beta-alpha zinc fingers | 210 | 240 | IPR036236 | - | |
| Aed3g2527 | 415 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 145 | 174 | IPR013087 | - | |
| Aed3g2527 | 415 | Pfam | Zinc finger, C2H2 type | 98 | 118 | IPR013087 | - | |
| Aed3g2527 | 415 | Pfam | Zinc finger, C2H2 type | 145 | 169 | IPR013087 | - | |
| Aed3g2527 | 415 | Pfam | Zinc finger, C2H2 type | 214 | 238 | IPR013087 | - | |
| Aed3g2527 | 415 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 216 | 238 | IPR013087 | - | |
| Aed3g2527 | 415 | Gene3D | Classic Zinc Finger | 37 | 129 | - | - | |
| Aed3g2527 | 415 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 214 | 243 | IPR013087 | - | |
| Aed3g2527 | 415 | SUPERFAMILY | beta-beta-alpha zinc fingers | 142 | 170 | IPR036236 | - | |
| Aed3g2527 | 415 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 307 | 330 | IPR013087 | - | |
| Aed3g2527 | 415 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 98 | 118 | IPR013087 | - | |
| Aed3g2527 | 415 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 248 | 271 | IPR013087 | - | |
| Aed3g2527 | 415 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 147 | 169 | IPR013087 | - | |
| Aed3g2527 | 415 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 305 | 335 | IPR013087 | - | |
| Aed3g2527 | 415 | SUPERFAMILY | beta-beta-alpha zinc fingers | 172 | 200 | IPR036236 | - | |
| Aed3g2527 | 415 | SUPERFAMILY | beta-beta-alpha zinc fingers | 288 | 343 | IPR036236 | - | |
| Aed3g2527 | 415 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 52 | 79 | IPR013087 | - | |
| Aed3g2527 | 415 | Gene3D | Classic Zinc Finger | 212 | 296 | - | - | |
| Aed3g2527 | 415 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 176 | 199 | IPR013087 | - | |
| Aed3g2527 | 415 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 174 | 204 | IPR013087 | - | |
| Aed3g2527 | 415 | PANTHER | ZINC FINGER PROTEIN | 39 | 406 | - | - | |
| Aed3g2527 | 415 | PANTHER | ZINC FINGER PROTEIN 423 HOMOLOG | 39 | 406 | - | - | |
| Aed3g2527 | 415 | Gene3D | Classic Zinc Finger | 142 | 170 | - | - | |
| Aed3g2527 | 415 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 96 | 123 | IPR013087 | - | |
| Aed3g2527 | 415 | SMART | c2h2final6 | 214 | 238 | IPR013087 | - | |
| Aed3g2527 | 415 | SMART | c2h2final6 | 96 | 118 | IPR013087 | - | |
| Aed3g2527 | 415 | SMART | c2h2final6 | 336 | 362 | IPR013087 | - | |
| Aed3g2527 | 415 | SMART | c2h2final6 | 246 | 271 | IPR013087 | - | |
| Aed3g2527 | 415 | SMART | c2h2final6 | 174 | 199 | IPR013087 | - | |
| Aed3g2527 | 415 | SMART | c2h2final6 | 305 | 330 | IPR013087 | - | |
| Aed3g2527 | 415 | SMART | c2h2final6 | 274 | 295 | IPR013087 | - | |
| Aed3g2527 | 415 | SMART | c2h2final6 | 145 | 169 | IPR013087 | - | |
| Aed3g2527 | 415 | SMART | c2h2final6 | 52 | 74 | IPR013087 | - | |
| Aed3g2527 | 415 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 338 | 362 | IPR013087 | - | |
| Aed3g2527 | 415 | SUPERFAMILY | beta-beta-alpha zinc fingers | 50 | 118 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed3g2527 | Aed-Chr3 | 27605970 | 27608365 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed3g2527 | 140 | 365 | C2H2 Transcription Factor Family | AT1G72050 | 51.079 | 8.03e-88 | 268 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Aed3g2527 | zf-C2H2 | 0.0029 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed3g2527 | K09191 | - | gmx:100801812 | 679.478 |