Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2510 ATGTCTGGTAGGTGTGCAGCTTGCAAGAATCAAAGAAGAAAATGCCCTTCAGATTGCATTTTCTCTCCATATTTTCCTGCCAATGATCCCCAAAGATTTGCTTGTGTTCACAGAATCTATGGTGGCAGCAATGTTGGAAGAATGCTTCAGGAAACTCCAGCATACTTACGTGAACAAGCTGCAAACACTTTGTATTTTGAAGCACAATGTAGGATTCAAGATCCTGTTTATGGATGTGTTGGGATTATCTCTAAATTATATGAAGAAATACAGAGTACAGAACTTGCACTTGCCAATATCCAAACTCAAATTGCTTGTCACAAGCTTCAAGTCCCAGAGGCAAAAGATGAATCAAACTTCAATAATGTCTTATCAACAATTGAAGCTGAATCAAACTTTGATGATGTCTTTCCAGCACAAAGCAGCAGCGCAGCAGAGTTTCAATGGACAAGTCAAGATAATGCTGGAAGAGTTAAGTGA 480 0.3896 MSGRCAACKNQRRKCPSDCIFSPYFPANDPQRFACVHRIYGGSNVGRMLQETPAYLREQAANTLYFEAQCRIQDPVYGCVGIISKLYEEIQSTELALANIQTQIACHKLQVPEAKDESNFNNVLSTIEAESNFDDVFPAQSSSAAEFQWTSQDNAGRVK 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2510 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 117 - -
Aed3g2510 159 Coils Coil 83 103 - -
Aed3g2510 159 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
Aed3g2510 159 Pfam Lateral organ boundaries (LOB) domain 4 100 IPR004883 -
Aed3g2510 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2510 Aed-Chr3 27514382 27515156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2510 4 105 AS2 family AT3G26660 62.745 1.00e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed3g2510 LOB 8.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2510 - - gmx:100790640 245.358