Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2505 ATGCCTTCGGCTCAAGATCCATTCTACGTTGTCAAGGCGGAGATTCAAGATTCTATTGATAAGCTCCAATCTACTTTTCACCAATGGGAAAACACTACTGATGCTGGCGAGCTATTCAATCTATCAAAGGAAGTTCTTTCTAGTTGTGAAAGCATTGAATGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTAGCCTCTAGAGATCCTTCTTGGTATGGCATTGATGATGTGGAGATTGAAAACCGGAGGAAGTGGACCAGTGATGCTCGCACCCAGGTGAGAGCAGCAAAGAAAGCAGTGGAAGCTGGAAAGGGCTCAAACATTGCTAGTCTAAATGGGATGCACAGAGAATTAATGAGGCTTCCTAGTTCTCATCAAACTACATCTAACCAATATGCTGCCCAGGATAATGATGATTTTATAGAGTCAGAATCGGACAGGCAGATGCTTCTTATGAAGAGGCAAGATGAGGAATTGGATGAGCTTAGTTTAAGTGTACAAAGAATAGGTGGGGTTGGACTTACTATACATGAAGAGCTCCTTGCACAGAAAAAAGTGGCAATGGTCATGAAGAAGGCTAGTGCGAAGGGCCAGATCATGATGATATTGGGTTTGCTGGCGCTGTTCATTTTCCTCTTTATCTTGGTATTCTTCACCTAG 663 0.4299 MPSAQDPFYVVKAEIQDSIDKLQSTFHQWENTTDAGELFNLSKEVLSSCESIEWQVDELDKAISVASRDPSWYGIDDVEIENRRKWTSDARTQVRAAKKAVEAGKGSNIASLNGMHRELMRLPSSHQTTSNQYAAQDNDDFIESESDRQMLLMKRQDEELDELSLSVQRIGGVGLTIHEELLAQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2505 220 PANTHER SYNTAXIN 1 219 IPR045242 -
Aed3g2505 220 Gene3D - 2 104 - -
Aed3g2505 220 Pfam Syntaxin 6, N-terminal 6 97 IPR015260 GO:0016020|GO:0048193
Aed3g2505 220 PANTHER SYNTAXIN PROTEIN 1 219 - -
Aed3g2505 220 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020|GO:0016192
Aed3g2505 220 Coils Coil 12 32 - -
Aed3g2505 220 Gene3D - 152 192 - -
Aed3g2505 220 CDD SNARE_Qc 153 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2505 Aed-Chr3 27485696 27489166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2505 55 220 SNARE and Associated Proteins AT1G28490 58.947 5.06e-71 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2505 K08500 - gmx:100793612 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2482 4 26888915 26892945 Aed3g2505 3 27485696 27489166 PCT