Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2499 ATGGGTTGTTGTATGAGTAAAAAAGGATCAGAGCCAGAAGAACAACACATTGGTGTGTATAATTACAAGAGCCATGAAATACCCCAAACGAAACCCCCTTCTCAGGCCCCATGGAGGCCTCCCCCAAGCCCAAAACATGTTCAGAAGCATGACACAATTATTGGGAAGCCATTTGAGGATGTTAAGAAGCACTACACACTTGGGAAAGAATTGGGGAGAGGGCAATTTGGGGTGACCTATCTCTGCACTGAGAATTCAACTGGGTTGCAATATGCCTGCAAGTCCATTTCAAAGAGGAAGCTTGTGAACAGAGCAGACAAGGAGGACATGAAGAGGGAGATTCAAATAATGCAGCATTTGAGTGGACAATCCAACATTGTGGAGTTCAAAGGTGCTTATGAGGATAAGCATTCAGTTCATGTGGTTATGGAGCTGTGTGCAGGTGGTGAACTTTTTGACAGGATTATTGCCAAGGGCCACTACACTGAAAGGGCTGCTGCTTCAATTTGTAGACAGGTTGTTAAGGTTGTTAACACCTGCCATTTTATGGGTGTCATTCATAGGGATCTCAAGCCTGAGAATTTCTTGCTATCCAGTAAGGATGACAAGGGGCTTCTCAAGGCCACAGATTTTGGCTTGTCAGTCTTCATTGAAGAAGGAAAGGTGTATCGAGATATAGTTGGCAGTGCTTACTATGTTGCTCCAGAAGTTCTACGTCGTAGCTATGGGAAGGAAGCAGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTAGTGGTGTACCTCCATTTTGGGCAGAGACGGAAAAGGGAATATTTGATGCCATATTAGAAGGTCGTATTGATTTTGAAAGTAGTCCATGGCCAAGCATATCAAACAGTGCTAAGGACCTTGTTCGCCAAATGCTTATAAAGGATCCAAAGAAACGCATTACTGCTGCTCAGGTTCTAGAGCACCCATGGCTTAAAGAAGGTGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTGCTTTCTAGAATGAAGCAATTCAGAGCAATGAATAAACTCAAAAAACTAGCCCTCAAGGTCATTGCTGAAAATCTTTCTGAAGAAGAGATCCAAGGTTTGAAGGCAATGTTCACAAATATCGACACTGACAATAGTGGTACAATCACCTATGAGGAACTGAGGGCAGGATTACAAAGACTTGGCTCAAAGCTTACTGAAGCTGAAGTGCGACAGCTTATGGATGCTGCTGATGTAGATGGAAATGGCACAATTGACTACATAGAATTCATCACTGCTACCATGCATAGACACAGGTTAGAAAGAGATGAGCATCTTTTCAAGGCCTTCCAATATTTTGATAAAGACGGCAGCGGGTATATCACAAGAGATGAACTGGAAACAGCCATGAAGGAGTATGGTATGGGTGACGAGGCCACAATCAGAGAAATTATATCTGAAGTTGACACAGATAACGATGGTAGAATCAACTATGAAGAATTTTGTACAATGATGAGAAGTGGAACCCAACAACAGGGCAGGCTATTCTAA 1542 0.4267 MGCCMSKKGSEPEEQHIGVYNYKSHEIPQTKPPSQAPWRPPPSPKHVQKHDTIIGKPFEDVKKHYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLVNRADKEDMKREIQIMQHLSGQSNIVEFKGAYEDKHSVHVVMELCAGGELFDRIIAKGHYTERAAASICRQVVKVVNTCHFMGVIHRDLKPENFLLSSKDDKGLLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRSYGKEADIWSAGVILYILLSGVPPFWAETEKGIFDAILEGRIDFESSPWPSISNSAKDLVRQMLIKDPKKRITAAQVLEHPWLKEGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNIDTDNSGTITYEELRAGLQRLGSKLTEAEVRQLMDAADVDGNGTIDYIEFITATMHRHRLERDEHLFKAFQYFDKDGSGYITRDELETAMKEYGMGDEATIREIISEVDTDNDGRINYEEFCTMMRSGTQQQGRLF 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2499 513 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Aed3g2499 513 SUPERFAMILY EF-hand 362 502 IPR011992 -
Aed3g2499 513 CDD EFh 442 503 IPR002048 GO:0005509
Aed3g2499 513 CDD EFh 371 430 IPR002048 GO:0005509
Aed3g2499 513 SUPERFAMILY Protein kinase-like (PK-like) 42 344 IPR011009 -
Aed3g2499 513 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Aed3g2499 513 CDD STKc_CAMK 64 322 - -
Aed3g2499 513 SMART efh_1 477 505 IPR002048 GO:0005509
Aed3g2499 513 SMART efh_1 370 398 IPR002048 GO:0005509
Aed3g2499 513 SMART efh_1 406 434 IPR002048 GO:0005509
Aed3g2499 513 SMART efh_1 442 470 IPR002048 GO:0005509
Aed3g2499 513 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Aed3g2499 513 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2499 513 Gene3D - 331 508 - -
Aed3g2499 513 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-LIKE 29 508 - -
Aed3g2499 513 Gene3D Phosphorylase Kinase; domain 1 67 150 - -
Aed3g2499 513 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Aed3g2499 513 Pfam Protein kinase domain 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2499 513 Coils Coil 388 408 - -
Aed3g2499 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Aed3g2499 513 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 508 - -
Aed3g2499 513 ProSiteProfiles EF-hand calcium-binding domain profile. 474 508 IPR002048 GO:0005509
Aed3g2499 513 SMART serkin_6 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2499 513 Pfam EF-hand domain pair 441 503 IPR002048 GO:0005509
Aed3g2499 513 Pfam EF-hand domain pair 371 431 IPR002048 GO:0005509
Aed3g2499 513 ProSitePatterns EF-hand calcium-binding domain. 486 498 IPR018247 -
Aed3g2499 513 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Aed3g2499 513 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Aed3g2499 513 Gene3D Transferase(Phosphotransferase) domain 1 151 330 - -
Aed3g2499 513 MobiDBLite consensus disorder prediction 1 49 - -
Aed3g2499 513 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2499 Aed-Chr3 27469838 27474180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2499 43 513 EF-hand Containing Proteins AT3G20410 83.298 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aed3g2499 Pkinase 1.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2499 K13412 - gmx:100794852 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2499 3 27469838 27474180 Aed4g2485 4 26907688 26915756 ECH
Aed3g2499 3 27469838 27474180 Aed3g2499 3 27469838 27474180 ECH