Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2498 ATGACCAACTGGTTTTCTGGAATGATATTAGAAACAGTGGAAATGTGTAAGCAACTTTGCATTGGCGGTTCTGTACTTGGCCTATTCATCAAAGCTATGGAAAGAGTTCTTTTTGCTCTATTTACTTGCATTCTGGCTCTAGGAGGGTCAATAGTAGGAACAATTGCAGGAGGCATCAAAGGGCAGACCACAGAAGCTGGTTTTGTTGATGGGGCTTGCAAAGGAGCAATTACAGGAGCCATTGCAGCATTGGAATTGATCAATTTTGATGCTGTTGATGAGCCTACACTGTCCAAGGTTGCTCTGTTATGTAGTTTATTAAATGGGAAAGTCTTTATGGAATGGATATGTCCAGCTGTTGAAAAACTCTATCAGTTGCATGTAACTGTTAACACACTGGAAACAATTTACCAAGAAGTATCAGACATTTATGATATCATGGGAGACAGAGGGATACCCCATAATGCAATTATGAAGCTTCCTTTTCAGCCATTCAACTCTAGCAAAATGTTGAAATTATACAACATGTCTTGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGGAGAATTGGTCAGGATACTACCAAAATGTAGCCACCTTTTTCATCTAGAATGCATAGACAAGTGGCTAGTCCAACAAGGATCGTGCCCAATGTGCAGAACTTATGTTCCTGACCACATTCGTAAATAA 693 0.3997 MTNWFSGMILETVEMCKQLCIGGSVLGLFIKAMERVLFALFTCILALGGSIVGTIAGGIKGQTTEAGFVDGACKGAITGAIAALELINFDAVDEPTLSKVALLCSLLNGKVFMEWICPAVEKLYQLHVTVNTLETIYQEVSDIYDIMGDRGIPHNAIMKLPFQPFNSSKMLKLYNMSCCSICFQDFEDGELVRILPKCSHLFHLECIDKWLVQQGSCPMCRTYVPDHIRK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2498 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 227 IPR013083 -
Aed3g2498 230 ProSiteProfiles Zinc finger RING-type profile. 179 221 IPR001841 -
Aed3g2498 230 CDD RING-H2_PA-TM-RING 178 221 - -
Aed3g2498 230 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 11 224 IPR044523 -
Aed3g2498 230 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 224 - -
Aed3g2498 230 SUPERFAMILY RING/U-box 178 226 - -
Aed3g2498 230 SMART ring_2 179 220 IPR001841 -
Aed3g2498 230 Pfam Ring finger domain 179 221 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2498 Aed-Chr3 27462935 27464605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2498 39 224 C3H Transcription Factor Family AT5G66070 36.082 7.73e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2498 - K19041 gmx:100305612 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2498 3 27462935 27464605 Aed3g2498 3 27462935 27464605 ECH