LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed3g2490	ATGAGAAGACCGAAATCCAAGGAGTTTCGCAAGCAACAGCGAGTTTCAGAGGAGGAAGAGATAAACCTCTTGAACTCATGGATCCAGTTTCAGCCACCGGATACGGGTTCGAACCCAATGTCGCTCCCTCCACTCCCCAAAAGCTCCCCCGTTGGCCGCCTCAATGACGACACCTACTCGCGCTACCCCGGCGCGTCGCGTTTCGAGCAATTTCCACTCTCGCAGAAAACCAAGGATGCCCTAAGAGTGGCCAAGTTCGTCGCCATGACCGACATTCAGAGAGCGTCTCTCCCCCACGCGCTCTGTGGCCGCGACATCCTCGGTGCCGCCAAAACTGGCTCTGGTAAAACCCTCGCTTTCATTGTCCCTATGTTGGAGAAGTTGTATAGAGAGCGATGGGGGCCTGAAGATGGGGTTGGCAGCATCATCATTTCGCCTACGAGAGAATTGGCTGGTCAGATATTTGATGTGTTGAAGATTGTTGGCAAACACCATAATTTTAGTGCTGGCCTTCTCATTGGTGGTCGAAAGGACGTTGACATGGAGAAGGAACGTGTTAATGAGCTCAACATATTGATTTGCACCCCTGGTAGACTGCTGCAACACATGGATGAAACTCCCAATTTTGATTGTTCACAGATGAAGGTTTTGGTACTAGATGAGGCTGATCGGATTCTAGACAGTGGGTTCAAGAGGGAACTAAATGCAATCATTTCTCAACTACCAAAGCGTAGACAAACCTTGCTTTTCTCTGCAACTCAAACAAAGTCAATTCAAGATCTTGCAAGACTAAGTTTGAAGGATCCAGAGTATCTGAGTGTACATGAAGAATCTGTGACAGCCACTCCTTCTCTGTTGAAGCAAATAGTGATGGTTGTTCCCCTGGATCAAAAGTTGGATATGCTGTGGAGTTTCATAAAGACACATCTACAGTCGAAAATACTAGTCTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTCGAAGCATTTAAGAAACTGCACCCTGGCATACCATTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTGGCCGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAAAATGTAGCTTCTTACATACATAGAGTTGGTCGCACTGCTCGGTATAAATCTGTTGGAAAGTCAGTTTTATTTCTGTTGCCTTCAGAAATTCAAATGCTTGAAAAGTTAAAAGCAGCAAAGGTTCCAGTGCATTTTACTAAGAAAATTAAATCTAAAGATGTGTCAACAAAACCAATTTTAGTTGAACCAGAGGATTCAAACAAGGAAACTTTCTTGGAGGTTTCAAGGAAGAAGAAGCTTGACACAGTTGCTTTCAATGATGAGGAAACCGAAAATGATATCTTTCATTTAGCGGATACTGCAAATGAAGGTGAAATGAAGTCATCTGAAATTGAAGAAATAATACCAGCAACTCGTGTGTTGAAGAAAAAGAAACTCAAGATTAATGTACACAGGCCACTTGGGACTAGGGTTGTATTTGATGATGAGGGCCACACACTTCCTCCACTAGCCAGGATAGCTGACACACAAAGTGGCAAAGAAATGCTGCTTGATCCAGAACAAAAAGCTGAATACTATAGAAGGATGCGAGATGATTTGAAGAAGGCTGACAAGGAAGACAAGCTTATAGAGCGTCAGAGGCGTAGAGAGAAAAGAATCAAGCAGAAGATGAAATGGAAGGCTGGGAATGGGGAAGAGGATGAAGATGATATTTCTGGGTCAGAAGGAGATGAAACTGTAGATAGACGGCATAAAAAGAGTAAAGTGTACTTTGATAGTGACAGTGACGAGGGTGAAAGAAATGAAGCCATAGGGAATGCACGTACCAGTACTGGCGCGGTTACTTTGGAGGAGCAAGAAGCTCTGGCTTTGAAATTGTTAAATTCCATGCACTCATAG	2016	0.4385	MRRPKSKEFRKQQRVSEEEEINLLNSWIQFQPPDTGSNPMSLPPLPKSSPVGRLNDDTYSRYPGASRFEQFPLSQKTKDALRVAKFVAMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIVPMLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKIVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMKVLVLDEADRILDSGFKRELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPSLLKQIVMVVPLDQKLDMLWSFIKTHLQSKILVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSVGKSVLFLLPSEIQMLEKLKAAKVPVHFTKKIKSKDVSTKPILVEPEDSNKETFLEVSRKKKLDTVAFNDEETENDIFHLADTANEGEMKSSEIEEIIPATRVLKKKKLKINVHRPLGTRVVFDDEGHTLPPLARIADTQSGKEMLLDPEQKAEYYRRMRDDLKKADKEDKLIERQRRREKRIKQKMKWKAGNGEEDEDDISGSEGDETVDRRHKKSKVYFDSDSDEGERNEAIGNARTSTGAVTLEEQEALALKLLNSMHS	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed3g2490	671	PANTHER	ATP-DEPENDENT RNA HELICASE DDX10-RELATED	58	429	-	-
	Aed3g2490	671	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	218	226	IPR000629	-
	Aed3g2490	671	Gene3D	-	283	521	IPR027417	-
	Aed3g2490	671	SMART	helicmild6	325	408	IPR001650	-
	Aed3g2490	671	CDD	DEADc_DDX10	77	275	-	-
	Aed3g2490	671	Pfam	DEAD/DEAH box helicase	90	260	IPR011545	GO:0003676\|GO:0005524
	Aed3g2490	671	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	294	452	IPR001650	-
	Aed3g2490	671	Gene3D	-	53	278	IPR027417	-
	Aed3g2490	671	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	97	272	IPR014001	-
	Aed3g2490	671	MobiDBLite	consensus disorder prediction	576	651	-	-
	Aed3g2490	671	Pfam	Helicase conserved C-terminal domain	298	407	IPR001650	-
	Aed3g2490	671	SMART	ultradead3	85	289	IPR014001	-
	Aed3g2490	671	PANTHER	RNA HELICASE	58	429	-	-
	Aed3g2490	671	MobiDBLite	consensus disorder prediction	615	642	-	-
	Aed3g2490	671	CDD	SF2_C_DEAD	286	417	-	-
	Aed3g2490	671	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	138	427	IPR027417	-
	Aed3g2490	671	MobiDBLite	consensus disorder prediction	31	53	-	-
	Aed3g2490	671	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	66	94	IPR014014	GO:0003724

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed3g2490	Aed-Chr3	27411681	27418301	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed3g2490	93	429	Eukaryotic Initiation Factors Gene Family	AT3G19760	30.117	9.13e-37	140

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed3g2490	K14776		-	cpap:110810936	880.167