Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2460 ATGGAGTTTCCGAACGAAATATCAATAATATCGGAAGGGTGTTCTCATGGGAAGAAAACGGGAAGAGGGAAAATAGAAATAAAACGGATCGAGAACACAACGAATAGGCAAGTTACCTTCTGCAAACGCCGCAACGGGTTGCTGAAGAAGGCTTATGAATTGTCTGTCCTCTGTGATGCTGAAGTTGCCCTTGTCGTCTTCTCAACCCGTGGACGCCTCTATGAATATGCCAACAACAGTGTTAGAGGAACTATCGATAGGTACAAGAAAGCATGTGCTGCTTCCTCAAATGCAGAATCTGTCTCTGAAGCTAATACACAGTTTTATCAGCAAGAAGCGTCCAAATTAAAAAGACAAATCAGAGACATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTAAAGGAATTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAGATAGGTGAACACGAGAGAGCACAAGAACGGGGAGAAGCAGAAGCGAATATGATAGGTGGTGGAACAGGAACATCACAATCATATGACCGCAATTTCTTCCCAGCTGTTAATCTCATAGATAATTCCAATCACCTATATAATAATAATTCACGTGATCAAGACCACACGCCTCTTCAACTTGTGTAA 669 0.417 MEFPNEISIISEGCSHGKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRGTIDRYKKACAASSNAESVSEANTQFYQQEASKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKIGEHERAQERGEAEANMIGGGTGTSQSYDRNFFPAVNLIDNSNHLYNNNSRDQDHTPLQLV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2460 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Aed3g2460 222 CDD MADS_MEF2_like 21 97 IPR033896 GO:0000977|GO:0045944
Aed3g2460 222 ProSiteProfiles K-box domain profile. 106 222 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed3g2460 222 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Aed3g2460 222 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Aed3g2460 222 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Aed3g2460 222 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Aed3g2460 222 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 15 162 - -
Aed3g2460 222 Pfam K-box region 104 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed3g2460 222 Gene3D - 32 116 IPR036879 GO:0003677|GO:0046983
Aed3g2460 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 15 162 - -
Aed3g2460 222 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Aed3g2460 222 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Aed3g2460 222 Coils Coil 140 160 - -
Aed3g2460 222 MobiDBLite consensus disorder prediction 161 184 - -
Aed3g2460 222 SUPERFAMILY SRF-like 21 96 IPR036879 GO:0003677|GO:0046983
Aed3g2460 222 Coils Coil 106 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2460 Aed-Chr3 27235497 27239361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2460 12 222 MADS-box Gene Family AT2G42830 61.538 5.34e-94 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed3g2460 K-box 3.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2460 K09264 - gmx:100782733 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2551 4 27468184 27479734 Aed3g2460 3 27235497 27239361 PCT