Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2449 ATGCAAAGGAAAGGGAGAAGAGCTCGTGACCAAGGAAGGGAGAAGATTGTGGGAGAGGACGAAAAGAGGTTGGGGTGTAGGAGAGTGAGGAGGGTAGGGAGGCCTACCAGTGTCTCAGTTTCCCGCCACATATATGTTGATCTTCCCGCCAATCATACACACCAACCACTTCGCTCTGGATTTCTTCGTTTTCCATCTCGCAAGCACGATTCTCTGATTCAGTCCATAATTTCGGTCGCAAAGCAATGGTCCCAGAGCAAGAACTCGATTTCAATCCCAATTATCTCAAGCTATATTACGGTTCATGGGAAGCACCCTGGTTGTGATCAATCCCACTTTGGGCGAAGAGAGTTTTCTTTCACTTTGGAGAATGACATATATCTGCGCTTCCAATCTTTCAACAATGCCCTTGAGCTCGAAAAGTCCATCAAAGAAAAGTCCCCTGTTAAGATAGATATTGGACCTGTCTACACTGTTGATCCTGCAAAAAAGAATGCCTATGCACAGAGTAGTGATAATAAAGTTTTTTCCCCAGTTGAGAGGGAGTTGATTTTTGATATAGATATGTCAGATTACGATGATGTTAGATACTGCTGTTCGGGTGCTGATGTTTGTTTGGTTTGCTGGCCGTTGATGACGATAGCGATCAAAGTGATAGATACTGCCTTAAGAGATGACTTTGGTTTCAAACACATTCTCTGGGTATATAGTGGACGCAGAGGTGTTCATTGTTGGGTCTGTGATGGAAAGGCAAGAAGGTTGACTAATGAGCAACGAGGGGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAATGAAAATAGTCACAAGAAGGTTTCTTTGACGGGTGCTGCTCTTCATCCTTTCTTGGCGACATCATACACTAATGTTCTCAAGGACTATTTTGAGAAAAATCTGCTTACAGGTCAAAATTTACTTGCTACCGAGGAGAGATATGAGAAGATCCTTGGCATGATTCCTGATGAATGTACTTTTTTCCTGTCCTCCCTTCATGTGAACCTTGTTATTTCATTCCCTGCTGTTAGCTTATGCAATACATGGGTTACTTTTGCAGCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAAGCGGTCTTCTAGTGCAAAAGAAGACATCAATGTTGTTCGATGGGAACAGTGCAAACAGTTGCTGCAATCTGGAAAACATAAGGCACAAGGGCTGCGTCGGTGCGTTGAGGAGATTGTGTTCTGCTTTACCTATCCCAGGCTAGATATGGAGGTTTCTAAACATATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAGGCCGTGTTTGTGTCCCTATTGATCCAAAACAGTGCGAGGAGTTTGATCCTACTACAGTACCCACCCTTTCACAGTTGATAGAAGAGCTTAATAATGAAGGCTCAAGAGCTGCTGATGTTGATGGTGAATTGAATAGAACCTCGCTTGGAAATGCCATTATGCTCTTCAGATCGTTATTCTTACAGCCTTTACTAAAAGCCTGCAAGGAGGAGATAGAAAATTCCTACAACTTAAAACTGCAGCAGTCAAAGAATTCTTCCCTTGGTTGGTAG 1596 0.4292 MQRKGRRARDQGREKIVGEDEKRLGCRRVRRVGRPTSVSVSRHIYVDLPANHTHQPLRSGFLRFPSRKHDSLIQSIISVAKQWSQSKNSISIPIISSYITVHGKHPGCDQSHFGRREFSFTLENDIYLRFQSFNNALELEKSIKEKSPVKIDIGPVYTVDPAKKNAYAQSSDNKVFSPVERELIFDIDMSDYDDVRYCCSGADVCLVCWPLMTIAIKVIDTALRDDFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRGAIADYFRVYKGNENSHKKVSLTGAALHPFLATSYTNVLKDYFEKNLLTGQNLLATEERYEKILGMIPDECTFFLSSLHVNLVISFPAVSLCNTWVTFAAIASELRGRWQDSKRSSSAKEDINVVRWEQCKQLLQSGKHKAQGLRRCVEEIVFCFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPKQCEEFDPTTVPTLSQLIEELNNEGSRAADVDGELNRTSLGNAIMLFRSLFLQPLLKACKEEIENSYNLKLQQSKNSSLGW 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2449 531 CDD AE_Prim_S 104 458 IPR014052 GO:0003896|GO:0006269
Aed3g2449 531 PANTHER DNA PRIMASE SMALL SUBUNIT 101 329 IPR014052 GO:0003896|GO:0006269
Aed3g2449 531 PANTHER DNA PRIMASE SMALL SUBUNIT 357 527 IPR014052 GO:0003896|GO:0006269
Aed3g2449 531 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 110 470 IPR014052 GO:0003896|GO:0006269
Aed3g2449 531 PANTHER DNA PRIMASE 101 329 - -
Aed3g2449 531 PANTHER DNA PRIMASE 357 527 - -
Aed3g2449 531 SUPERFAMILY Prim-pol domain 112 473 - -
Aed3g2449 531 Pfam DNA primase small subunit 185 449 IPR002755 GO:0003896|GO:0006269
Aed3g2449 531 Gene3D DNA primase, PRIM domain 82 511 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2449 103 527 Core DNA Replication Machinery Family AT5G41880 62.824 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2449 K02684 - gmx:100780574 758.829