Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2432 ATGGTTGCTACGAAGCAGTTTCACCAGTACCAGGTGGTGGGAAGGGCTCTTCCTACCGAAACCGATGCGCATCCTAAGATCTACCGCATGAAACTCTGGGCTACCAACGAGGTCCGCGCCAAATCCAAGTTCTGGTATTTTTTGAGAAAGTTGAAGAAGGTTAAGAAAAGCAATGGACAAATGCTTGCTATCAATGAGATTTTTGAGAAGAATCCTACCAAGATTAAGAATTATGGAATTTGGCTGCGTTACCAGAGTCGTACTGGTTATCACAATATGTACAAGGAATACCGTGATACTACTCTCAATGGTGCGGTTGGGTATATGTACAATGAAATGGCATCTCGTCACAGGGTGAGGCATCCATGCATCCAGATAATTAAGACTGCAACCATCCCTGCTAAGCTGTGCAAAAGGGAGAGCACCAAGCAGTTCCACAATTCTAAAATCAAGTTCCCATTGATGTTCAAGAAGGTTAGGCCCCCAACTAGGAAGCTGAAGACAACATACAAGGCAACCAGGCCAAACCTGTTTACATGA 540 0.4444 MVATKQFHQYQVVGRALPTETDAHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVGYMYNEMASRHRVRHPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLMFKKVRPPTRKLKTTYKATRPNLFT 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2432 179 PIRSF Ribosomal_L18a 1 179 IPR021138 GO:0003735|GO:0005840|GO:0006412
Aed3g2432 179 Hamap 50S ribosomal protein L18Ae [rpl18a]. 7 70 IPR028877 -
Aed3g2432 179 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 8 129 IPR023573 GO:0003735|GO:0005840|GO:0006412
Aed3g2432 179 Gene3D - 1 72 - -
Aed3g2432 179 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 138 IPR028877 -
Aed3g2432 179 PANTHER 60S RIBOSOMAL PROTEIN L18A 139 178 - -
Aed3g2432 179 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 138 - -
Aed3g2432 179 PANTHER 60S RIBOSOMAL PROTEIN L18A 139 178 IPR028877 -
Aed3g2432 179 Gene3D - 73 148 - -
Aed3g2432 179 SUPERFAMILY RplX-like 72 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2432 Aed-Chr3 27091978 27093906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2432 6 178 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 90.173 2.65e-118 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2432 K02882 K22683 gmx:100306365 350.132