Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2421 ATGGATGTGGCCAACAAGTTACATAACTCTGATGATGATGATGAAGAAGTTGTGCTTCCTGGGTTTAGATTCCATCCAACTGATGAAGAGCTTGTGGGGTTTTATCTGAGACGAAAGGTGGAGAAGAAGCCTCTCAAAATTGAACTCATCAAACAGATTGACATCTACAAATACGATCCATGGGATCTTCCAAAAGTGATGAGTTCAGTGGGGGAGAAGGAATGGTACTTTTTTTGCATAAGAGGGAGAAAATACAGGAACAGCATAAGGCCTAATAGGGTAACAGGTTCCGGATTTTGGAAAGCCACAGGGATTGATAAGCCTATTTACTGTGTTAAAGAACCTCATGATCATCCTCATCAATGCATTGGTCTCAAGAAATCATTGGTCTACTATCGTGGAAGTGCTGGTAAAGGCACCAAAACCGATTGGATGATGCACGAGTTTCGCCTCCCACCCAATGGAAAAACTACCAACAATCTACAATCTAATGATGTTCAAGAAGCTGAAGTGTGGACGCTATGCAGAATATTCAAACGAGTCCCAACTTACAAGAAGTACACACCAAATTTGAAAGACTCAGCAATCACGACAAACTCTTCAAGTTCCAAAACGACATGCAGTTTAGAATCTGACAACGGCAAGCCATATTTGACTTTCACAAACTCATCGCTCGTTCAACAAAATGAAATAATTAGGAAACCTGCAGTTATTGGACATGTTGAACAACGTAACCAACACTTATTTCTAGGTCAATTTCAGCCTCCAACTTACTCTACTTTTTGGAATCAGAATAGTGTCCAGTTTGCTAATGAGAATTGGGATGATCTCACATCTGTGGTTCAGTTTGCTACTGATCCATCCAAGGTTTCTGATCGATCATTGTAA 888 0.4043 MDVANKLHNSDDDDEEVVLPGFRFHPTDEELVGFYLRRKVEKKPLKIELIKQIDIYKYDPWDLPKVMSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHDHPHQCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKTTNNLQSNDVQEAEVWTLCRIFKRVPTYKKYTPNLKDSAITTNSSSSKTTCSLESDNGKPYLTFTNSSLVQQNEIIRKPAVIGHVEQRNQHLFLGQFQPPTYSTFWNQNSVQFANENWDDLTSVVQFATDPSKVSDRSL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2421 295 ProSiteProfiles NAC domain profile. 18 180 IPR003441 GO:0003677|GO:0006355
Aed3g2421 295 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 293 - -
Aed3g2421 295 Gene3D NAC domain 27 183 IPR036093 GO:0003677|GO:0006355
Aed3g2421 295 Pfam No apical meristem (NAM) protein 20 151 IPR003441 GO:0003677|GO:0006355
Aed3g2421 295 PANTHER - 5 293 - -
Aed3g2421 295 SUPERFAMILY NAC domain 17 179 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2421 Aed-Chr3 27040517 27042967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2421 15 181 NAC Transcription Factor Family AT5G39820 60.440 7.52e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed3g2421 NAM 4.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2421 - - gmx:100784323 471.855